RNA–Protein interactions for RNA: ENST00000514536.5

USP46-209, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 2

Gene USP46, Length 1,589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-209ENST00000514536 ITLN2Q8WWU7 325 aaPredicted RBP12.61□□□□□ -0.39
USP46-209ENST00000514536 PMM1Q92871 262 aa12.61□□□□□ -0.39
USP46-209ENST00000514536 PSMG3-AS1Q96PY0 264 aa12.61□□□□□ -0.39
USP46-209ENST00000514536 TREX2Q9BQ50 279 aaPredicted RBP12.61□□□□□ -0.39
USP46-209ENST00000514536 FAM53CQ9NYF3 392 aa12.61□□□□□ -0.39
USP46-209ENST00000514536 SLC35A3Q9Y2D2 325 aa12.61□□□□□ -0.39
USP46-209ENST00000514536 MED12Q93074 2177 aa12.61□□□□□ -0.39
USP46-209ENST00000514536 PCNX3Q9H6A9 2034 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 A0A0G2JPF8 293 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 A1L4Q6 167 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 BBIP1A8MTZ0 92 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 KDM4EB2RXH2 506 aaPredicted RBP12.6□□□□□ -0.39
USP46-209ENST00000514536 HNRNPCL2B2RXH8 293 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 HNRNPCL3B7ZW38 293 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 C5orf58C9J3I9 102 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 H0Y3Z8 333 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 LINC01387J3KSC0 135 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 MRASO14807 208 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 HNRNPCL1O60812 293 aaKnown RBP12.6□□□□□ -0.39
USP46-209ENST00000514536 DBIP07108 87 aaKnown RBP12.6□□□□□ -0.39
USP46-209ENST00000514536 LINGO3P0C6S8 592 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 HNRNPCL4P0DMR1 293 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 GLI4P10075 376 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 PEPDP12955 493 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 ZNF708P17019 499 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 RPS4Y1P22090 263 aaKnown RBP12.6□□□□□ -0.39
USP46-209ENST00000514536 PTGER4P35408 488 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 CLDN18P56856 261 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 MTPNP58546 118 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 SKP2Q13309 424 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 BCL2A1Q16548 175 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 ACSF3Q4G176 576 aaPredicted RBP12.6□□□□□ -0.39
USP46-209ENST00000514536 REP15Q6BDI9 236 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 VRK2Q86Y07 508 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 UBQLNLQ8IYU4 475 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 GTPBP8Q8N3Z3 284 aaPredicted RBP12.6□□□□□ -0.39
USP46-209ENST00000514536 ZNF808Q8N4W9 903 aaPredicted RBP12.6□□□□□ -0.39
USP46-209ENST00000514536 OR10Q1Q8NGQ4 319 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 OR52P1PQ8NH57 321 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 NFKBIDQ8NI38 313 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 POC1BQ8TC44 478 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 WDR60Q8WVS4 1066 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 SMPDL3BQ92485 455 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 RND1Q92730 232 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 ZBTB8AQ96BR9 441 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 ZNF524Q96C55 264 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 LRRC58Q96CX6 371 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 RNF145Q96MT1 663 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 TRIB1Q96RU8 372 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 TUBA1CQ9BQE3 449 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 CCDC106Q9BWC9 280 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 DIDO1Q9BTC0 2240 aaKnown RBP12.6□□□□□ -0.39
USP46-209ENST00000514536 USP9XQ93008 2570 aaPredicted RBP12.6□□□□□ -0.39
USP46-209ENST00000514536 EPPINO95925 133 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 OPN1LWP04000 364 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 ARAFP10398 606 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 GP1BBP13224 206 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 CDK6Q00534 326 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 CBFBQ13951 182 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 SF3B4Q15427 424 aaKnown RBP eCLIP12.6□□□□□ -0.39
USP46-209ENST00000514536 ADRM1Q16186 407 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 TRMT5Q32P41 509 aaKnown RBP12.6□□□□□ -0.39
USP46-209ENST00000514536 COQ5Q5HYK3 327 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 NANOGP8Q6NSW7 305 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 XKRXQ6PP77 449 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 CMIPQ8IY22 773 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 FBXO27Q8NI29 283 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 RP9Q8TA86 221 aaKnown RBP12.6□□□□□ -0.39
USP46-209ENST00000514536 ZPLD1Q8TCW7 415 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 CNOT9Q92600 299 aaKnown RBP12.6□□□□□ -0.39
USP46-209ENST00000514536 SDCCAG3Q96C92 435 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 SLC39A3Q9BRY0 314 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 NANOGQ9H9S0 305 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 BCL2L10Q9HD36 194 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 AP4B1Q9Y6B7 739 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 DSPPQ9NZW4 1301 aa12.6□□□□□ -0.39
USP46-209ENST00000514536 USP9YO00507 2555 aaPredicted RBP12.59□□□□□ -0.39
USP46-209ENST00000514536 C7orf72A4D263 438 aa12.59□□□□□ -0.39
USP46-209ENST00000514536 H0YC42 278 aa12.59□□□□□ -0.39
USP46-209ENST00000514536 SEC14L5O43304 696 aa12.59□□□□□ -0.39
USP46-209ENST00000514536 PGM3O95394 542 aa12.59□□□□□ -0.39
USP46-209ENST00000514536 COX4I1P13073 169 aa12.59□□□□□ -0.39
USP46-209ENST00000514536 NID1P14543 1247 aa12.59□□□□□ -0.39
USP46-209ENST00000514536 ZNF17P17021 662 aa12.59□□□□□ -0.39
USP46-209ENST00000514536 PSMA4P25789 261 aaKnown RBP12.59□□□□□ -0.39
USP46-209ENST00000514536 RYKP34925 604 aa12.59□□□□□ -0.39
USP46-209ENST00000514536 EIF1P41567 113 aaKnown RBP12.59□□□□□ -0.39
USP46-209ENST00000514536 SUCLG1P53597 346 aaKnown RBP12.59□□□□□ -0.39
USP46-209ENST00000514536 TPD52P55327 224 aaPredicted RBP12.59□□□□□ -0.39
USP46-209ENST00000514536 CLDN15P56746 228 aa12.59□□□□□ -0.39
USP46-209ENST00000514536 CLDN20P56880 219 aa12.59□□□□□ -0.39
USP46-209ENST00000514536 PLAURQ03405 335 aa12.59□□□□□ -0.39
USP46-209ENST00000514536 FOXF1Q12946 379 aa12.59□□□□□ -0.39
USP46-209ENST00000514536 QPRTQ15274 297 aa12.59□□□□□ -0.39
USP46-209ENST00000514536 PRAMEF8Q5VWM4 474 aa12.59□□□□□ -0.39
USP46-209ENST00000514536 PRAMEF7Q5VXH5 474 aa12.59□□□□□ -0.39
USP46-209ENST00000514536 NSUN5P2Q63ZY6 315 aa12.59□□□□□ -0.39
USP46-209ENST00000514536 REEP3Q6NUK4 255 aa12.59□□□□□ -0.39
USP46-209ENST00000514536 PLXDC2Q6UX71 529 aa12.59□□□□□ -0.39
USP46-209ENST00000514536 SEM1Q6ZVN7 128 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms