RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 CRISP3P54108 245 aa14.38□□□□□ -0.11
LIME1-209ENST00000494776 CLDN20P56880 219 aa14.38□□□□□ -0.11
LIME1-209ENST00000494776 GNA13Q14344 377 aa14.38□□□□□ -0.11
LIME1-209ENST00000494776 FGFBP1Q14512 234 aa14.38□□□□□ -0.11
LIME1-209ENST00000494776 RGNQ15493 299 aa14.38□□□□□ -0.11
LIME1-209ENST00000494776 SGCBQ16585 318 aa14.38□□□□□ -0.11
LIME1-209ENST00000494776 TMEM44Q2T9K0 475 aa14.38□□□□□ -0.11
LIME1-209ENST00000494776 LRIF1Q5T3J3 769 aa14.38□□□□□ -0.11
LIME1-209ENST00000494776 ZNF787Q6DD87 383 aa14.38□□□□□ -0.11
LIME1-209ENST00000494776 PEX5LQ8IYB4 626 aa14.38□□□□□ -0.11
LIME1-209ENST00000494776 MBD3L2Q8NHZ7 208 aaPredicted RBP14.38□□□□□ -0.11
LIME1-209ENST00000494776 GPR119Q8TDV5 335 aa14.38□□□□□ -0.11
LIME1-209ENST00000494776 ZG16BQ96DA0 208 aa14.38□□□□□ -0.11
LIME1-209ENST00000494776 THUMPD3Q9BV44 507 aaKnown RBP14.38□□□□□ -0.11
LIME1-209ENST00000494776 QRSL1Q9H0R6 528 aaKnown RBP14.38□□□□□ -0.11
LIME1-209ENST00000494776 SLC38A1Q9H2H9 487 aa14.38□□□□□ -0.11
LIME1-209ENST00000494776 MRGBPQ9NV56 204 aa14.38□□□□□ -0.11
LIME1-209ENST00000494776 SLAMF8Q9P0V8 285 aa14.38□□□□□ -0.11
LIME1-209ENST00000494776 GPC6Q9Y625 555 aaPredicted RBP14.38□□□□□ -0.11
LIME1-209ENST00000494776 NOTCH2Q04721 2471 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 C7orf72A4D263 438 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 EVPLLA8MZ36 301 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 H0YC42 278 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 EIF1AYO14602 144 aaKnown RBP14.37□□□□□ -0.11
LIME1-209ENST00000494776 OPN1LWP04000 364 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 SNRPB2P08579 225 aaKnown RBP14.37□□□□□ -0.11
LIME1-209ENST00000494776 LINGO3P0C6S8 592 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 PGCP20142 388 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 BMP5P22003 454 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 CEACAM8P31997 349 aaPredicted RBP14.37□□□□□ -0.11
LIME1-209ENST00000494776 SUCLG1P53597 346 aaKnown RBP14.37□□□□□ -0.11
LIME1-209ENST00000494776 MVDP53602 400 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 TPD52P55327 224 aaPredicted RBP14.37□□□□□ -0.11
LIME1-209ENST00000494776 KCNJ10P78508 379 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 FOXF1Q12946 379 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 FADDQ13158 208 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 SKP2Q13309 424 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 SLC25A35Q3KQZ1 300 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 CGB2Q6NT52 195 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 PPP4R4Q6NUP7 873 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 C9orf106Q8NAJ2 232 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 FBXO27Q8NI29 283 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 WDR60Q8WVS4 1066 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 PMM1Q92871 262 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 WNT2BQ93097 391 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 KLHDC3Q9BQ90 382 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 PINK1Q9BXM7 581 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 ZNF385DQ9H6B1 395 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 RUBCNLQ9H714 662 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 TMEM185BQ9H7F4 350 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 SLC52A3Q9NQ40 469 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 SLC25A37Q9NYZ2 338 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 KLHL14Q9P2G3 628 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 CORO2BQ9UQ03 480 aa14.37□□□□□ -0.11
LIME1-209ENST00000494776 UTP20O75691 2785 aaKnown RBP14.36□□□□□ -0.11
LIME1-209ENST00000494776 AGAP5A6NIR3 686 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 SLC22A20A6NK97 555 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 C5orf58C9J3I9 102 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 DBIP07108 87 aaKnown RBP14.36□□□□□ -0.11
LIME1-209ENST00000494776 TFPTP0C1Z6 253 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 TMIGD3P0DMS9 266 aaPredicted RBP14.36□□□□□ -0.11
LIME1-209ENST00000494776 COX6B1P14854 86 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 CD1EP15812 388 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 CTSSP25774 331 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 ADH6P28332 368 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 RYKP34925 604 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 PGM1P36871 562 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 EIF1AXP47813 144 aaKnown RBP14.36□□□□□ -0.11
LIME1-209ENST00000494776 CLDN15P56746 228 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 RAC1P63000 192 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 QPRTQ15274 297 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 TOMM34Q15785 309 aaPredicted RBP14.36□□□□□ -0.11
LIME1-209ENST00000494776 PDSS1Q5T2R2 415 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 AP1ARQ63HQ0 302 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 PLXDC2Q6UX71 529 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 LIX1LQ8IVB5 337 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 CMIPQ8IY22 773 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 LILRA2Q8N149 483 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 NAXEQ8NCW5 288 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 ATP6V1C2Q8NEY4 427 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 ZNF563Q8TA94 476 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 POC1BQ8TC44 478 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 TSPEARQ8WU66 669 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 SLC38A5Q8WUX1 472 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 TMEM234Q8WY98 164 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 ARSGQ96EG1 525 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 MRGPRX4Q96LA9 322 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 UCN2Q96RP3 112 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 NPAS1Q99742 590 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 PRRG4Q9BZD6 226 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 VAPAQ9P0L0 249 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 CLCF1Q9UBD9 225 aa14.36□□□□□ -0.11
LIME1-209ENST00000494776 ZNF629Q9UEG4 869 aaPredicted RBP14.36□□□□□ -0.11
LIME1-209ENST00000494776 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.35□□□□□ -0.11
LIME1-209ENST00000494776 CLDN24A6NM45 220 aa14.35□□□□□ -0.11
LIME1-209ENST00000494776 GJE1A6NN92 205 aa14.35□□□□□ -0.11
LIME1-209ENST00000494776 C19orf84I3L1E1 186 aa14.35□□□□□ -0.11
LIME1-209ENST00000494776 HNRNPRO43390 633 aaKnown RBP14.35□□□□□ -0.11
LIME1-209ENST00000494776 PRKCAP17252 672 aa14.35□□□□□ -0.11
LIME1-209ENST00000494776 HOXB9P17482 250 aaPredicted RBP14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms