RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 CSTAP01040 98 aa14.35□□□□□ -0.11
UPF3A-208ENST00000484246 NPPAP01160 153 aa14.35□□□□□ -0.11
UPF3A-208ENST00000484246 BCHEP06276 602 aa14.35□□□□□ -0.11
UPF3A-208ENST00000484246 DBIP07108 87 aaKnown RBP14.35□□□□□ -0.11
UPF3A-208ENST00000484246 THBS1P07996 1170 aa14.35□□□□□ -0.11
UPF3A-208ENST00000484246 NID1P14543 1247 aa14.35□□□□□ -0.11
UPF3A-208ENST00000484246 POU3F2P20265 443 aaPredicted RBP14.35□□□□□ -0.11
UPF3A-208ENST00000484246 TIMP3P35625 211 aa14.35□□□□□ -0.11
UPF3A-208ENST00000484246 SEC24CP53992 1094 aa14.35□□□□□ -0.11
UPF3A-208ENST00000484246 KCNJ10P78508 379 aa14.35□□□□□ -0.11
UPF3A-208ENST00000484246 CBFBQ13951 182 aa14.35□□□□□ -0.11
UPF3A-208ENST00000484246 ZSWIM7Q19AV6 140 aa14.35□□□□□ -0.11
UPF3A-208ENST00000484246 TRMT5Q32P41 509 aaKnown RBP14.35□□□□□ -0.11
UPF3A-208ENST00000484246 GCNT6Q5T4J0 391 aa14.35□□□□□ -0.11
UPF3A-208ENST00000484246 NCCRP1Q6ZVX7 275 aaPredicted RBP14.35□□□□□ -0.11
UPF3A-208ENST00000484246 MAMDC2Q7Z304 686 aaPredicted RBP14.35□□□□□ -0.11
UPF3A-208ENST00000484246 PEX5LQ8IYB4 626 aa14.35□□□□□ -0.11
UPF3A-208ENST00000484246 MBD3L2Q8NHZ7 208 aaPredicted RBP14.35□□□□□ -0.11
UPF3A-208ENST00000484246 POC1BQ8TC44 478 aa14.35□□□□□ -0.11
UPF3A-208ENST00000484246 GPR119Q8TDV5 335 aa14.35□□□□□ -0.11
UPF3A-208ENST00000484246 ASB5Q8WWX0 329 aa14.35□□□□□ -0.11
UPF3A-208ENST00000484246 ZG16BQ96DA0 208 aa14.35□□□□□ -0.11
UPF3A-208ENST00000484246 MRGPRX4Q96LA9 322 aa14.35□□□□□ -0.11
UPF3A-208ENST00000484246 FAM53CQ9NYF3 392 aa14.35□□□□□ -0.11
UPF3A-208ENST00000484246 CLCF1Q9UBD9 225 aa14.35□□□□□ -0.11
UPF3A-208ENST00000484246 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.35□□□□□ -0.11
UPF3A-208ENST00000484246 CAMK2AQ9UQM7 478 aa14.35□□□□□ -0.11
UPF3A-208ENST00000484246 VDAC3Q9Y277 283 aa14.35□□□□□ -0.11
UPF3A-208ENST00000484246 ZNF407Q9C0G0 2248 aa14.35□□□□□ -0.11
UPF3A-208ENST00000484246 NINQ8N4C6 2090 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 A0A0G2JPF8 293 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 GMNCA6NCL1 334 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 EVPLLA8MZ36 301 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 HNRNPCL2B2RXH8 293 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 HNRNPCL3B7ZW38 293 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 H0Y3Z8 333 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 FXYD1O00168 92 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 FAAHO00519 579 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 HNRNPCL1O60812 293 aaKnown RBP14.34□□□□□ -0.11
UPF3A-208ENST00000484246 CLDN1O95832 211 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 NUDT7P0C024 238 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 HNRNPCL4P0DMR1 293 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 ETS2P15036 469 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 CHRNB4P30926 498 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 CEACAM8P31997 349 aaPredicted RBP14.34□□□□□ -0.11
UPF3A-208ENST00000484246 EEFSECP57772 596 aaKnown RBP14.34□□□□□ -0.11
UPF3A-208ENST00000484246 PMPCAQ10713 525 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 NFYCQ13952 458 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 NDUFAF6Q330K2 333 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 LCE2DQ5TA82 110 aaPredicted RBP14.34□□□□□ -0.11
UPF3A-208ENST00000484246 RNF220Q5VTB9 566 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 NET1Q7Z628 596 aaPredicted RBP14.34□□□□□ -0.11
UPF3A-208ENST00000484246 GRAMD2AQ8IUY3 354 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 LURAP1LQ8IV03 231 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 C10orf111Q8N326 155 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 BBS10Q8TAM1 723 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 WDR60Q8WVS4 1066 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 ST8SIA1Q92185 356 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 ZFP3Q96NJ6 502 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 TUBA1CQ9BQE3 449 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 QRSL1Q9H0R6 528 aaKnown RBP14.34□□□□□ -0.11
UPF3A-208ENST00000484246 COQ3Q9NZJ6 369 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 STOML1Q9UBI4 398 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 ZNF337Q9Y3M9 751 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 NCKAP5O14513 1909 aa14.34□□□□□ -0.11
UPF3A-208ENST00000484246 USP9YO00507 2555 aaPredicted RBP14.33□□□□□ -0.11
UPF3A-208ENST00000484246 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.33□□□□□ -0.12
UPF3A-208ENST00000484246 BCAS1O75363 584 aaPredicted RBP14.33□□□□□ -0.12
UPF3A-208ENST00000484246 UBTFL6P0CB48 400 aaPredicted RBP14.33□□□□□ -0.12
UPF3A-208ENST00000484246 PRKCAP17252 672 aa14.33□□□□□ -0.12
UPF3A-208ENST00000484246 SLC6A8P48029 635 aa14.33□□□□□ -0.12
UPF3A-208ENST00000484246 STARP49675 285 aa14.33□□□□□ -0.12
UPF3A-208ENST00000484246 CLDN15P56746 228 aa14.33□□□□□ -0.12
UPF3A-208ENST00000484246 RAC1P63000 192 aa14.33□□□□□ -0.12
UPF3A-208ENST00000484246 GNGT1P63211 74 aa14.33□□□□□ -0.12
UPF3A-208ENST00000484246 SF3A3Q12874 501 aaKnown RBP eCLIP14.33□□□□□ -0.124e-6■■■■□ 22.2
UPF3A-208ENST00000484246 FOXF1Q12946 379 aa14.33□□□□□ -0.12
UPF3A-208ENST00000484246 QPRTQ15274 297 aa14.33□□□□□ -0.12
UPF3A-208ENST00000484246 ADRM1Q16186 407 aa14.33□□□□□ -0.12
UPF3A-208ENST00000484246 LIN52Q52LA3 116 aa14.33□□□□□ -0.12
UPF3A-208ENST00000484246 REP15Q6BDI9 236 aa14.33□□□□□ -0.12
UPF3A-208ENST00000484246 GGNQ86UU5 652 aa14.33□□□□□ -0.12
UPF3A-208ENST00000484246 SNX32Q86XE0 403 aa14.33□□□□□ -0.12
UPF3A-208ENST00000484246 MEIOBQ8N635 442 aa14.33□□□□□ -0.12
UPF3A-208ENST00000484246 SLC35B4Q969S0 331 aa14.33□□□□□ -0.12
UPF3A-208ENST00000484246 ADGRG7Q96K78 797 aa14.33□□□□□ -0.12
UPF3A-208ENST00000484246 RNF145Q96MT1 663 aa14.33□□□□□ -0.12
UPF3A-208ENST00000484246 ELAC2Q9BQ52 826 aaKnown RBP14.33□□□□□ -0.12
UPF3A-208ENST00000484246 DNAJB12Q9NXW2 375 aaKnown RBP14.33□□□□□ -0.12
UPF3A-208ENST00000484246 RNF6Q9Y252 685 aa14.33□□□□□ -0.12
UPF3A-208ENST00000484246 ZNF175Q9Y473 711 aa14.33□□□□□ -0.12
UPF3A-208ENST00000484246 NUP214P35658 2090 aaPredicted RBP14.33□□□□□ -0.12
UPF3A-208ENST00000484246 PTPN13Q12923 2485 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 A0A0G2JNJ9 132 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 CDHR4A6H8M9 788 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 HSPB2A8KAH6 182 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 MRASO14807 208 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 ADAMDEC1O15204 470 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 GMFGO60234 142 aa14.32□□□□□ -0.12
UPF3A-208ENST00000484246 TOXO94900 526 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms