RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 AP4B1Q9Y6B7 739 aa16.84■□□□□ 0.29
USP39-209ENST00000458268 NPIPB9F8W1W9 429 aa16.83■□□□□ 0.28
USP39-209ENST00000458268 LINC01387J3KSC0 135 aa16.83■□□□□ 0.28
USP39-209ENST00000458268 TNFSF11O14788 317 aa16.83■□□□□ 0.28
USP39-209ENST00000458268 KIAA0513O60268 411 aa16.83■□□□□ 0.28
USP39-209ENST00000458268 SMNDC1O75940 238 aaKnown RBP eCLIP16.83■□□□□ 0.28
USP39-209ENST00000458268 ETFAP13804 333 aa16.83■□□□□ 0.28
USP39-209ENST00000458268 ZNF17P17021 662 aa16.83■□□□□ 0.28
USP39-209ENST00000458268 IL11P20809 199 aa16.83■□□□□ 0.28
USP39-209ENST00000458268 RYKP34925 604 aa16.83■□□□□ 0.28
USP39-209ENST00000458268 ASCL1P50553 236 aa16.83■□□□□ 0.28
USP39-209ENST00000458268 PON3Q15166 354 aa16.83■□□□□ 0.28
USP39-209ENST00000458268 MAPK14Q16539 360 aa16.83■□□□□ 0.28
USP39-209ENST00000458268 BCL2A1Q16548 175 aa16.83■□□□□ 0.28
USP39-209ENST00000458268 FRRS1Q6ZNA5 592 aa16.83■□□□□ 0.28
USP39-209ENST00000458268 GTPBP8Q8N3Z3 284 aaPredicted RBP16.83■□□□□ 0.28
USP39-209ENST00000458268 FNDC9Q8TBE3 224 aa16.83■□□□□ 0.28
USP39-209ENST00000458268 POC1BQ8TC44 478 aa16.83■□□□□ 0.28
USP39-209ENST00000458268 ZFP90Q8TF47 636 aa16.83■□□□□ 0.28
USP39-209ENST00000458268 THUMPD3Q9BV44 507 aaKnown RBP16.83■□□□□ 0.28
USP39-209ENST00000458268 L3MBTL1Q9Y468 752 aa16.83■□□□□ 0.28
USP39-209ENST00000458268 PRAMEF27A3QJZ7 478 aa16.82■□□□□ 0.28
USP39-209ENST00000458268 CXCL13O43927 109 aa16.82■□□□□ 0.28
USP39-209ENST00000458268 EDF1O60869 148 aaKnown RBP16.82■□□□□ 0.28
USP39-209ENST00000458268 OPRM1P35372 400 aa16.82■□□□□ 0.28
USP39-209ENST00000458268 CPOXP36551 454 aa16.82■□□□□ 0.28
USP39-209ENST00000458268 CBFBQ13951 182 aa16.82■□□□□ 0.28
USP39-209ENST00000458268 QPRTQ15274 297 aa16.82■□□□□ 0.28
USP39-209ENST00000458268 ZNF141Q15928 474 aa16.82■□□□□ 0.28
USP39-209ENST00000458268 EIF3MQ7L2H7 374 aaKnown RBP16.82■□□□□ 0.28
USP39-209ENST00000458268 SPDL1Q96EA4 605 aa16.82■□□□□ 0.28
USP39-209ENST00000458268 SPOCK3Q9BQ16 436 aa16.82■□□□□ 0.28
USP39-209ENST00000458268 ENKD1Q9H0I2 346 aa16.82■□□□□ 0.28
USP39-209ENST00000458268 TPT1P8Q9HAU6 139 aa16.82■□□□□ 0.28
USP39-209ENST00000458268 ZNF629Q9UEG4 869 aaPredicted RBP16.82■□□□□ 0.28
USP39-209ENST00000458268 ICAM5Q9UMF0 924 aa16.82■□□□□ 0.28
USP39-209ENST00000458268 CLDN24A6NM45 220 aa16.81■□□□□ 0.28
USP39-209ENST00000458268 EIF4E2O60573 245 aaKnown RBP16.81■□□□□ 0.28
USP39-209ENST00000458268 RCBTB2O95199 551 aa16.81■□□□□ 0.28
USP39-209ENST00000458268 SYNGR4O95473 234 aa16.81■□□□□ 0.28
USP39-209ENST00000458268 BCHEP06276 602 aa16.81■□□□□ 0.28
USP39-209ENST00000458268 CHRM4P08173 479 aa16.81■□□□□ 0.28
USP39-209ENST00000458268 LINGO3P0C6S8 592 aa16.81■□□□□ 0.28
USP39-209ENST00000458268 SUMO3P55854 103 aaPredicted RBP16.81■□□□□ 0.28
USP39-209ENST00000458268 DSTNP60981 165 aa16.81■□□□□ 0.28
USP39-209ENST00000458268 TLE4Q04727 773 aa16.81■□□□□ 0.28
USP39-209ENST00000458268 SQLEQ14534 574 aa16.81■□□□□ 0.28
USP39-209ENST00000458268 TMEM44Q2T9K0 475 aa16.81■□□□□ 0.28
USP39-209ENST00000458268 HBMQ6B0K9 141 aa16.81■□□□□ 0.28
USP39-209ENST00000458268 MSANTD1Q6ZTZ1 278 aa16.81■□□□□ 0.28
USP39-209ENST00000458268 ADGRE4PQ86SQ3 457 aa16.81■□□□□ 0.28
USP39-209ENST00000458268 GGNQ86UU5 652 aa16.81■□□□□ 0.28
USP39-209ENST00000458268 LILRA2Q8N149 483 aa16.81■□□□□ 0.28
USP39-209ENST00000458268 OR5W2Q8NH69 310 aa16.81■□□□□ 0.28
USP39-209ENST00000458268 OR10D3Q8NH80 312 aa16.81■□□□□ 0.28
USP39-209ENST00000458268 ZNF563Q8TA94 476 aa16.81■□□□□ 0.28
USP39-209ENST00000458268 GPR119Q8TDV5 335 aa16.81■□□□□ 0.28
USP39-209ENST00000458268 ZG16BQ96DA0 208 aa16.81■□□□□ 0.28
USP39-209ENST00000458268 TRIM8Q9BZR9 551 aa16.81■□□□□ 0.28
USP39-209ENST00000458268 POLE3Q9NRF9 147 aa16.81■□□□□ 0.28
USP39-209ENST00000458268 P2RX2Q9UBL9 471 aa16.81■□□□□ 0.28
USP39-209ENST00000458268 CLEC4AQ9UMR7 237 aa16.81■□□□□ 0.28
USP39-209ENST00000458268 LIPT1Q9Y234 373 aa16.81■□□□□ 0.28
USP39-209ENST00000458268 MAST4O15021 2626 aa16.81■□□□□ 0.28
USP39-209ENST00000458268 TMEM247A6NEH6 219 aa16.8■□□□□ 0.28
USP39-209ENST00000458268 BCAS1O75363 584 aaPredicted RBP16.8■□□□□ 0.28
USP39-209ENST00000458268 PLGP00747 810 aaPredicted RBP16.8■□□□□ 0.28
USP39-209ENST00000458268 VIMP08670 466 aaKnown RBP16.8■□□□□ 0.28
USP39-209ENST00000458268 PRKCAP17252 672 aa16.8■□□□□ 0.28
USP39-209ENST00000458268 CAPN3P20807 821 aa16.8■□□□□ 0.28
USP39-209ENST00000458268 SHC1P29353 583 aa16.8■□□□□ 0.28
USP39-209ENST00000458268 EIF1P41567 113 aaKnown RBP16.8■□□□□ 0.28
USP39-209ENST00000458268 DLX5P56178 289 aa16.8■□□□□ 0.28
USP39-209ENST00000458268 RAC1P63000 192 aa16.8■□□□□ 0.28
USP39-209ENST00000458268 SKP2Q13309 424 aa16.8■□□□□ 0.28
USP39-209ENST00000458268 FGFBP1Q14512 234 aa16.8■□□□□ 0.28
USP39-209ENST00000458268 RPS26P11Q5JNZ5 115 aaPredicted RBP16.8■□□□□ 0.28
USP39-209ENST00000458268 PDSS1Q5T2R2 415 aa16.8■□□□□ 0.28
USP39-209ENST00000458268 VWA1Q6PCB0 445 aa16.8■□□□□ 0.28
USP39-209ENST00000458268 FUNDC1Q8IVP5 155 aa16.8■□□□□ 0.28
USP39-209ENST00000458268 DMRTC2Q8IXT2 367 aaPredicted RBP16.8■□□□□ 0.28
USP39-209ENST00000458268 ARFGAP2Q8N6H7 521 aa16.8■□□□□ 0.28
USP39-209ENST00000458268 OR2V1Q8NHB1 315 aa16.8■□□□□ 0.28
USP39-209ENST00000458268 WDR60Q8WVS4 1066 aa16.8■□□□□ 0.28
USP39-209ENST00000458268 GTF2H4Q92759 462 aa16.8■□□□□ 0.28
USP39-209ENST00000458268 DNAJA3Q96EY1 480 aa16.8■□□□□ 0.28
USP39-209ENST00000458268 KLHL15Q96M94 604 aa16.8■□□□□ 0.28
USP39-209ENST00000458268 TRNT1Q96Q11 434 aaKnown RBP16.8■□□□□ 0.28
USP39-209ENST00000458268 ZNF559Q9BR84 538 aa16.8■□□□□ 0.28
USP39-209ENST00000458268 SFXN3Q9BWM7 321 aa16.8■□□□□ 0.28
USP39-209ENST00000458268 LAT2Q9GZY6 243 aa16.8■□□□□ 0.28
USP39-209ENST00000458268 PAIP1Q9H074 479 aaKnown RBP16.8■□□□□ 0.28
USP39-209ENST00000458268 ST6GALNAC1Q9NSC7 600 aaPredicted RBP16.8■□□□□ 0.28
USP39-209ENST00000458268 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.8■□□□□ 0.28
USP39-209ENST00000458268 PCDHB14Q9Y5E9 798 aa16.8■□□□□ 0.28
USP39-209ENST00000458268 GPC6Q9Y625 555 aaPredicted RBP16.8■□□□□ 0.28
USP39-209ENST00000458268 CELSR2Q9HCU4 2923 aa16.8■□□□□ 0.28
USP39-209ENST00000458268 NOTCH2Q04721 2471 aa16.79■□□□□ 0.28
USP39-209ENST00000458268 A0A0J9YW62 118 aa16.79■□□□□ 0.28
USP39-209ENST00000458268 A0A1W2PNV4 684 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms