RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 TRAPPC4Q9Y296 219 aa5.77□□□□□ -1.49
USP54-202ENST00000413442 EMC9Q9Y3B6 208 aa5.77□□□□□ -1.49
USP54-202ENST00000413442 PCNX1Q96RV3 2341 aa5.77□□□□□ -1.49
USP54-202ENST00000413442 SPTBN1Q01082 2364 aaKnown RBP5.77□□□□□ -1.49
USP54-202ENST00000413442 CACNA1CQ13936 2221 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 CACNA1DQ01668 2161 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 FLNBO75369 2602 aaKnown RBP5.76□□□□□ -1.49
USP54-202ENST00000413442 A0A096LPI6 279 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 A0A1W2PP18 115 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 FAM221AA4D161 298 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 AGAP5A6NIR3 686 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 CASKO14936 926 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 SLC22A2O15244 555 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 ZNF208O43345 1280 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 KIAA0513O60268 411 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 FCMRO60667 390 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 EIF1BO60739 113 aaKnown RBP5.76□□□□□ -1.49
USP54-202ENST00000413442 EDF1O60869 148 aaKnown RBP5.76□□□□□ -1.49
USP54-202ENST00000413442 UGT2B17O75795 530 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 NTN1O95631 604 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 NUDT14O95848 222 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 OR12D1P0DN82 309 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 TROVE2P10155 538 aaKnown RBP eCLIP5.76□□□□□ -1.49
USP54-202ENST00000413442 NR2F1P10589 423 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 EPXP11678 715 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 ETS2P15036 469 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 IL7RP16871 459 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 GPX2P18283 190 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 PSMA4P25789 261 aaKnown RBP5.76□□□□□ -1.49
USP54-202ENST00000413442 KIR2DL3P43628 341 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 RFX3P48380 749 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 IDH3AP50213 366 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 ZNF136P52737 540 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 CLDN15P56746 228 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 RBBP4Q09028 425 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 SELENBP1Q13228 472 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 LARS2Q15031 903 aaKnown RBP5.76□□□□□ -1.49
USP54-202ENST00000413442 PDK3Q15120 406 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 GPR68Q15743 365 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 SLC9B1Q4ZJI4 515 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 GPAT3Q53EU6 434 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 LRIF1Q5T3J3 769 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 DESI1Q6ICB0 168 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 C3orf33Q6P1S2 294 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 C5orf46Q6UWT4 87 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 SEM1Q6ZVN7 128 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 ZNF550Q7Z398 422 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 STK32CQ86UX6 486 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 KRT73Q86Y46 540 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 CLECL1Q8IZS7 167 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 TNIP2Q8NFZ5 429 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 OR6K3Q8NGY3 331 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 ZHX1-C8orf76Q96EF9 292 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 PPP1R36Q96LQ0 422 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 DACH2Q96NX9 599 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 ZNF559Q9BR84 538 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 YIPF4Q9BSR8 244 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 CCDC134Q9H6E4 229 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 TPT1P8Q9HAU6 139 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 ACER3Q9NUN7 267 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 MED17Q9NVC6 651 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 PACSIN3Q9UKS6 424 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 RPH3AQ9Y2J0 694 aaPredicted RBP5.76□□□□□ -1.49
USP54-202ENST00000413442 AP3M1Q9Y2T2 418 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 HDGFL3Q9Y3E1 203 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 PTPN13Q12923 2485 aa5.76□□□□□ -1.49
USP54-202ENST00000413442 MED12LQ86YW9 2145 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 COL12A1Q99715 3063 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 PRORSD1PA6NEY8 169 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 TUBAL3A6NHL2 446 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 H3BML4 177 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 CLIC1O00299 241 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 HMGN4O00479 90 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 GPR171O14626 319 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 TMCC2O75069 709 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 SERPINB7O75635 380 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 PRKD3O94806 890 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 TFPTP0C1Z6 253 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 NID1P14543 1247 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 PRKCAP17252 672 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 BMP5P22003 454 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 IL12AP29459 219 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 PGM1P36871 562 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 STARP49675 285 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 AQP5P55064 265 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 CTBP2P56545 445 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 ZNF117Q03924 483 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 SRYQ05066 204 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 SQLEQ14534 574 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 RGNQ15493 299 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 MAPRE2Q15555 327 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 TTMPQ5BVD1 217 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 COQ5Q5HYK3 327 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 PDZK1Q5T2W1 519 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 HBMQ6B0K9 141 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 ZNF787Q6DD87 383 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 TYW3Q6IPR3 259 aaKnown RBP5.75□□□□□ -1.49
USP54-202ENST00000413442 GRINAQ7Z429 371 aa5.75□□□□□ -1.49
USP54-202ENST00000413442 WDR53Q7Z5U6 358 aaPredicted RBP5.75□□□□□ -1.49
USP54-202ENST00000413442 LIX1LQ8IVB5 337 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms