RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 LILRA4P59901 499 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 INCA1Q0VD86 236 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 TMEM244Q5VVB8 128 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 BTNL8Q6UX41 500 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 OR4N4Q8N0Y3 316 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 VGLL2Q8N8G2 317 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 BSCL2Q96G97 398 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-206ENST00000409809 LYSMD1Q96S90 227 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 KCNG2Q9UJ96 466 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 MRPS23Q9Y3D9 190 aaKnown RBP12.17□□□□□ -0.46
COL6A3-206ENST00000409809 PCDHA9Q9Y5H5 950 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 ANKUB1A6NFN9 424 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 LOC730098B7Z3J9 87 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 ZNF44P15621 663 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 CCR7P32248 378 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 PER3P56645 1201 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 CDK5Q00535 292 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 ECM1Q16610 540 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 CATSPERGQ6ZRH7 1159 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 SPRED1Q7Z699 444 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 BCO2Q9BYV7 579 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 PLEKHJ1Q9NW61 149 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 GABARAPH6UMI1 98 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 TCRBP04435 133 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 HNF1AP20823 631 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 MEOX2P50222 304 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 FAM182BQ5T319 152 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 CHADLQ6NUI6 762 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 DPF1Q92782 380 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 ZNF300Q96RE9 604 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-206ENST00000409809 VAMP8Q9BV40 100 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 RRAGCQ9HB90 399 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 DAP3P51398 398 aaKnown RBP12.17□□□□□ -0.46
COL6A3-206ENST00000409809 HABP2Q14520 560 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-206ENST00000409809 ZNF485Q8NCK3 441 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 RCBTB1Q8NDN9 531 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 OR52P1PQ8NH57 321 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 FBXL18Q96ME1 805 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 RNF11Q9Y3C5 154 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 ELOA3CA0A087WX78 387 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-206ENST00000409809 C2orf72A6NCS6 295 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 UMAD1C9J7I0 102 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 K7EQM0 130 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 FOXD2O60548 495 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-206ENST00000409809 TPPP2P59282 170 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 ADIPOR1Q96A54 375 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 TRMT61BQ9BVS5 477 aaKnown RBP12.17□□□□□ -0.46
COL6A3-206ENST00000409809 AK6Q9Y3D8 172 aaKnown RBP12.17□□□□□ -0.46
COL6A3-206ENST00000409809 CELF2O95319 508 aaKnown RBP12.17□□□□□ -0.46
COL6A3-206ENST00000409809 SLC5A8Q8N695 610 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 OR51Q1Q8NH59 317 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 GCM1Q9NP62 436 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 CNOT4O95628 575 aaKnown RBP12.16□□□□□ -0.46
COL6A3-206ENST00000409809 SLC35D2Q76EJ3 337 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 ZNF680Q8NEM1 530 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 TMIGD2Q96BF3 282 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 ANKRD9Q96BM1 317 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-206ENST00000409809 OSER1Q9NX31 292 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 KLRF1Q9NZS2 232 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 TMEM150BA6NC51 233 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 SLC6A8P48029 635 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 ZNF133P52736 654 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-206ENST00000409809 P2RX3P56373 397 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 OR4D2P58180 307 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 GBX1Q14549 363 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 EML3Q32P44 896 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 CLLU1Q5K131 121 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 TAF9BQ9HBM6 251 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 NRIP3Q9NQ35 241 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 B3GALT1Q9Y5Z6 326 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 CLDN5O00501 218 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 KCNQ2O43526 872 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 CPOXP36551 454 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 CLCNKBP51801 687 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 CXADRP78310 365 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 RGL4Q8IZJ4 473 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 OR51T1Q8NGJ9 327 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 ZNF778Q96MU6 729 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 STYXL1Q9Y6J8 313 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 K7ERU9 68 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 CPNE6O95741 557 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 GLUD1P00367 558 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 RAB11AP62491 216 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 HIST1H3AP68431 136 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 ACSM3Q53FZ2 586 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 PAGE3Q5JUK9 113 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 ATPAF1Q5TC12 328 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-206ENST00000409809 FAM205BPQ63HN1 556 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 LYPD4Q6UWN0 246 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 PPP1R35Q8TAP8 253 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 LRIG1Q96JA1 1093 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 MS4A4EQ96PG1 132 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 ANKRD19PQ9H560 264 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 PDZD7Q9H5P4 517 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 C11orf49Q9H6J7 331 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 BABAM2Q9NXR7 383 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 HPNP05981 417 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 T-ENOLP0DO92 83 aa12.16□□□□□ -0.46
COL6A3-206ENST00000409809 VEGFAP15692 232 aaPredicted RBP12.16□□□□□ -0.46
COL6A3-206ENST00000409809 GHRHRQ02643 423 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms