RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 LINC00471Q8N535 108 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 CDRT4Q8N9R6 151 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 BBS10Q8TAM1 723 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 SETD6Q8TBK2 473 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 CTHRC1Q96CG8 243 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 TMCO6Q96DC7 493 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 KCNS3Q9BQ31 491 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 TREX2Q9BQ50 279 aaPredicted RBP12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 SLX1AQ9BQ83 275 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 ASPNQ9BXN1 380 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 POLR2J3Q9H1A7 115 aaKnown RBP12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 NPAP1Q9NZP6 1156 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 REV1Q9UBZ9 1251 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 RIF1Q5UIP0 2472 aaKnown RBP12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 GPX5O75715 221 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 SOX30O94993 753 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 FUT4P22083 530 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 GALNSP34059 522 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 KCNJ5P48544 419 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 MAN2A2P49641 1150 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 E2F1Q01094 437 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 RUNX1T1Q06455 604 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 COX10Q12887 443 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 SSX1Q16384 188 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 OCLNQ16625 522 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 VWA2Q5GFL6 755 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 RPS26P11Q5JNZ5 115 aaPredicted RBP12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 PRAMEF8Q5VWM4 474 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 PRAMEF7Q5VXH5 474 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 C12orf73Q69YU5 71 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 COX15Q7KZN9 410 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 OLIG3Q7RTU3 272 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 NLGN4XQ8N0W4 816 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 PROKR2Q8NFJ6 384 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 APOBEC4Q8WW27 367 aaKnown RBP12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 DHRS1Q96LJ7 313 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 OPALINQ96PE5 141 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 CNPPD1Q9BV87 410 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 TOR4AQ9NXH8 423 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 SEC14L3Q9UDX4 400 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 KCNE3Q9Y6H6 103 aa12.18□□□□□ -0.46
SQSTM1-201ENST00000360718 A0A0G2JPF8 293 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 SYNDIG1LA6NDD5 238 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 HNRNPCL2B2RXH8 293 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 HNRNPCL3B7ZW38 293 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 LRP3O75074 770 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 HNRNPCL4P0DMR1 293 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 FGF5P12034 268 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 ENDOUP21128 410 aaKnown RBP12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 ELAVL4P26378 380 aaKnown RBP12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 EXOSC7Q15024 291 aaKnown RBP12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 ZNHIT3Q15649 155 aaPredicted RBP12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 TCTN3Q6NUS6 607 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 SLC16A11Q8NCK7 471 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 TRIM45Q9H8W5 580 aaPredicted RBP12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 CACYBPQ9HB71 228 aaKnown RBP12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 SMURF1Q9HCE7 757 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 BCL2L10Q9HD36 194 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 SSR3Q9UNL2 185 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 PMS2P1A4D2B8 440 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 HRKO00198 91 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 CTDSP2O14595 271 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 SPNP16150 400 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 ZNF28P17035 718 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 S100A1P23297 94 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 TNFSF8P32971 234 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 CASP3P42574 277 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 DCDP81605 110 aaKnown RBP12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 ALDH6A1Q02252 535 aaKnown RBP12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 ZNF267Q14586 743 aaPredicted RBP12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 NDUFA5Q16718 116 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 NKAIN1Q4KMZ8 207 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 DEF8Q6ZN54 512 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 LAPTM4BQ86VI4 370 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 CLIP4Q8N3C7 705 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 GPR32P1Q8NGA4 272 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 OR52R1Q8NGF1 315 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 CDS1Q92903 461 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 SLC35A4Q96G79 324 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 CMKLR1Q99788 373 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 RSPO3Q9BXY4 272 aaPredicted RBP12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 STRADBQ9C0K7 418 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 IRF2BPLQ9H1B7 796 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 PIGUQ9H490 435 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 HHATLQ9HCP6 504 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 CTSFQ9UBX1 484 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 STUB1Q9UNE7 303 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 LSM2Q9Y333 95 aaKnown RBP12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 GRIP1Q9Y3R0 1128 aa12.17□□□□□ -0.46
SQSTM1-201ENST00000360718 MYL12BO14950 172 aa12.16□□□□□ -0.46
SQSTM1-201ENST00000360718 RGS5O15539 181 aa12.16□□□□□ -0.46
SQSTM1-201ENST00000360718 PRAMEF2O60811 474 aa12.16□□□□□ -0.46
SQSTM1-201ENST00000360718 KRT8P05787 483 aa12.16□□□□□ -0.46
SQSTM1-201ENST00000360718 CCKBRP32239 447 aa12.16□□□□□ -0.46
SQSTM1-201ENST00000360718 NBL1P41271 181 aa12.16□□□□□ -0.46
SQSTM1-201ENST00000360718 PGDP52209 483 aa12.16□□□□□ -0.46
SQSTM1-201ENST00000360718 INSM1Q01101 510 aaPredicted RBP12.16□□□□□ -0.46
SQSTM1-201ENST00000360718 MC2RQ01718 297 aa12.16□□□□□ -0.46
SQSTM1-201ENST00000360718 FUT5Q11128 374 aa12.16□□□□□ -0.46
SQSTM1-201ENST00000360718 ZNF155Q12901 538 aaPredicted RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms