RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 SLC22A16Q86VW1 577 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 NINJ1Q92982 152 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 LCORQ96JN0 433 aaPredicted RBP13.91□□□□□ -0.18
COL17A1-201ENST00000353479 ZNF583Q96ND8 569 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 ANKRD60Q9BZ19 345 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 ETAA1Q9NY74 926 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 MMACHCQ9Y4U1 282 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 HCRTR1O43613 425 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 RAD1O60671 282 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 CD1CP29017 333 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 MED25Q71SY5 747 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 FCAMRQ8WWV6 532 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 UTP4Q969X6 686 aaKnown RBP13.91□□□□□ -0.18
COL17A1-201ENST00000353479 OR52A5Q9H2C5 316 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 CDH20Q9HBT6 801 aa13.91□□□□□ -0.18
COL17A1-201ENST00000353479 DISC1C4P0D8 188 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 PLOD2O00469 737 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 VNN2O95498 520 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 TSFMP43897 325 aaKnown RBP13.9□□□□□ -0.18
COL17A1-201ENST00000353479 GLO1Q04760 184 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 TMEM69Q5SWH9 247 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 FAM217AQ8IXS0 508 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 MS4A15Q8N5U1 240 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 MS4A6EQ96DS6 147 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.9□□□□□ -0.18
COL17A1-201ENST00000353479 MICAL3Q7RTP6 2002 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 CEACAM5P06731 702 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 MAGEA8P43361 318 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 CSNK1A1P48729 337 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 LRRN1Q6UXK5 716 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 LINC00696Q6ZRV3 163 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 NEDD4LQ96PU5 975 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 UTP23Q9BRU9 249 aaKnown RBP13.9□□□□□ -0.18
COL17A1-201ENST00000353479 FUNDC2Q9BWH2 189 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 SMURF1Q9HCE7 757 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 NUFIP1Q9UHK0 495 aaKnown RBP13.9□□□□□ -0.18
COL17A1-201ENST00000353479 CAMK2AQ9UQM7 478 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 ASB1Q9Y576 335 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 F5H5K5 113 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 LCATP04180 440 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 AP2S1P53680 142 aaPredicted RBP13.9□□□□□ -0.18
COL17A1-201ENST00000353479 TPTEP56180 551 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 TEX37Q96LM6 180 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 TVP23AA6NH52 213 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 TARM1B6A8C7 271 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 IFNA21P01568 189 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 GRK5P34947 590 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 SYT13Q7L8C5 426 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 FOXN4Q96NZ1 517 aa13.9□□□□□ -0.18
COL17A1-201ENST00000353479 DLEC1Q9Y238 1755 aa13.9□□□□□ -0.19
COL17A1-201ENST00000353479 IGHV3-20A0A0C4DH32 117 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 SCGB1D2O95969 90 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 ECH1Q13011 328 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 SF3B4Q15427 424 aaKnown RBP eCLIP13.89□□□□□ -0.19
COL17A1-201ENST00000353479 FOXRED2Q8IWF2 684 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 OR1J4Q8NGS1 313 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 SPTSSAQ969W0 71 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 NUDT22Q9BRQ3 303 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 URM1Q9BTM9 101 aaKnown RBP13.89□□□□□ -0.19
COL17A1-201ENST00000353479 WDR37Q9Y2I8 494 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 KNL1Q8NG31 2342 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 TRBV5-4A0A0C4DH59 114 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 SERINC4A6NH21 518 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 SYT7O43581 403 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 PEX11BO96011 259 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 POU3F1Q03052 451 aaPredicted RBP13.89□□□□□ -0.19
COL17A1-201ENST00000353479 PDE7AQ13946 482 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 STK11Q15831 433 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 CNEP1R1Q8N9A8 125 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 NRG4Q8WWG1 115 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 BEX2Q9BXY8 128 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 NT5DC2Q9H857 520 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 BEX1Q9HBH7 125 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 TRBV4-1A0A0J9YWV2 114 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 ALOX12BO75342 701 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 RAD51DO75771 328 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 UTS2O95399 124 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 PGBD2Q6P3X8 592 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 MMP21Q8N119 569 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 PELI3Q8N2H9 469 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 NUDT8Q8WV74 236 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 NEURL3Q96EH8 262 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 SLC46A1Q96NT5 459 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 ELF4Q99607 663 aaPredicted RBP13.89□□□□□ -0.19
COL17A1-201ENST00000353479 FAM183AA6NL82 134 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 LCKP06239 509 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 TMEM176BQ3YBM2 270 aaPredicted RBP13.89□□□□□ -0.19
COL17A1-201ENST00000353479 ELP4Q96EB1 424 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 EVA1AQ9H8M9 152 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 SCP2D1Q9UJQ7 156 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 WASF3Q9UPY6 502 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 TMEM265A0A087WTH1 108 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 SLC16A7O60669 478 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 KCNK5O95279 499 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 F13BP05160 661 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 ST6GAL1P15907 406 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 SLC6A12P48065 614 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 E2F1Q01094 437 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 OLIG3Q7RTU3 272 aa13.89□□□□□ -0.19
COL17A1-201ENST00000353479 ZNF578Q96N58 590 aaPredicted RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms