RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 WDR77Q9BQA1 342 aaPredicted RBP13.49□□□□□ -0.25
COL7A1-201ENST00000328333 OR51B5Q9H339 312 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 METTL17Q9H7H0 456 aaPredicted RBP13.49□□□□□ -0.25
COL7A1-201ENST00000328333 SLC2A4RGQ9NR83 387 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 CACNG3O60359 315 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 HPGDSO60760 199 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 LAP3P28838 519 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 TIGD3Q6B0B8 471 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 NAA40Q86UY6 237 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 NDRG1Q92597 394 aaKnown RBP13.49□□□□□ -0.25
COL7A1-201ENST00000328333 QRSL1Q9H0R6 528 aaKnown RBP13.49□□□□□ -0.25
COL7A1-201ENST00000328333 PSAT1Q9Y617 370 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 KPTNQ9Y664 436 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 V9GY05 133 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 MYLKQ15746 1914 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 MPPED1O15442 326 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 CLDN7O95471 211 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 M6PRP20645 277 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 RPS21P63220 83 aaKnown RBP13.48□□□□□ -0.25
COL7A1-201ENST00000328333 OR4K15Q8NH41 348 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 ST7LQ8TDW4 575 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 RTP4Q96DX8 246 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 ZNF586Q9NXT0 402 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 TGM5O43548 720 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 PMS2P2O95744 297 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 ZC3H3Q8IXZ2 948 aaKnown RBP13.48□□□□□ -0.25
COL7A1-201ENST00000328333 SAP130Q9H0E3 1048 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 FAM96BQ9Y3D0 163 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 SPTAN1Q13813 2472 aaKnown RBP13.48□□□□□ -0.25
COL7A1-201ENST00000328333 GPR39O43194 453 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 OC90Q02509 493 aaPredicted RBP13.48□□□□□ -0.25
COL7A1-201ENST00000328333 PRKCZQ05513 592 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 APOOLQ6UXV4 268 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 TRAPPC6BQ86SZ2 158 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 UEVLDQ8IX04 471 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 RAB8BQ92930 207 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 KATNB1Q9BVA0 655 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 PCDHB10Q9UN67 800 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 OR1A2Q9Y585 309 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 IGLV3-22A0A075B6J6 115 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 MROH6A6NGR9 719 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 PPP5D1E7EU14 171 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 FUT4P22083 530 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 CEACAM7Q14002 265 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 C3orf38Q5JPI3 329 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 ATPAF1Q5TC12 328 aaPredicted RBP13.48□□□□□ -0.25
COL7A1-201ENST00000328333 CRTC1Q6UUV9 634 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 OR5T1Q8NG75 326 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 OR9A2Q8NGT5 310 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 SCARB1Q8WTV0 552 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 GOLGA2P5Q9HBQ8 144 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 ZNF337Q9Y3M9 751 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 POP7O75817 140 aaKnown RBP13.48□□□□□ -0.25
COL7A1-201ENST00000328333 VNN1O95497 513 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 C1GALT1C1LP0DN25 315 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 DUSP6Q16828 381 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 DTWD1Q8N5C7 304 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 C11orf84Q9BUA3 381 aaPredicted RBP13.48□□□□□ -0.25
COL7A1-201ENST00000328333 CCDC163A0A0D9SF12 145 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 ZNF587BE7ETH6 402 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 C11orf98E9PRG8 122 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 CCL16O15467 120 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 DDCP20711 480 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 MAT2AP31153 395 aaKnown RBP13.48□□□□□ -0.25
COL7A1-201ENST00000328333 DDOSTP39656 456 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 HENMT1Q5T8I9 393 aaKnown RBP13.48□□□□□ -0.25
COL7A1-201ENST00000328333 SERTAD4Q9NUC0 356 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 KIAA0895LQ68EN5 471 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 ANKRD9Q96BM1 317 aaPredicted RBP13.48□□□□□ -0.25
COL7A1-201ENST00000328333 FGGYQ96C11 551 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 ANKRD19PQ9H560 264 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 ZNF281Q9Y2X9 895 aa13.48□□□□□ -0.25
COL7A1-201ENST00000328333 EP300Q09472 2414 aaPredicted RBP13.48□□□□□ -0.25
COL7A1-201ENST00000328333 ELAVL3Q14576 367 aaKnown RBP13.47□□□□□ -0.25
COL7A1-201ENST00000328333 TMEM244Q5VVB8 128 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 ZNF100Q8IYN0 542 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 SEMA4CQ9C0C4 833 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 hCG_1807616A0A1W2PRN6 198 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 TAAR5O14804 337 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 RGS11O94810 467 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 CAPNS1P04632 268 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 ZNF8P17098 575 aaPredicted RBP13.47□□□□□ -0.25
COL7A1-201ENST00000328333 RNF111Q6ZNA4 994 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 PDZD3Q86UT5 571 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 RYDENQ9NUL5 291 aaKnown RBP13.47□□□□□ -0.25
COL7A1-201ENST00000328333 HHLA2Q9UM44 414 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 RIPK3Q9Y572 518 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 SCG5P05408 212 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 TNFSF4P23510 183 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 ZNF133P52736 654 aaPredicted RBP13.47□□□□□ -0.25
COL7A1-201ENST00000328333 HNRNPKP61978 463 aaKnown RBP eCLIP13.47□□□□□ -0.25
COL7A1-201ENST00000328333 PLPP4Q5VZY2 271 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 HUS1BQ8NHY5 278 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 NKX6-2Q9C056 277 aaPredicted RBP13.47□□□□□ -0.25
COL7A1-201ENST00000328333 FAM198AQ9UFP1 575 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 APOA2P02652 100 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 TMEM225BP0DP42 221 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 PSMB3P49720 205 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 ZNF705AQ6ZN79 300 aaPredicted RBP13.47□□□□□ -0.25
COL7A1-201ENST00000328333 KLHDC1Q8N7A1 406 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms