RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 ASGR2P07307 311 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 EIF2DP41214 584 aaKnown RBP9.3□□□□□ -0.92
COL6A3-201ENST00000295550 ZNF100Q8IYN0 542 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 FEVQ99581 238 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 ST6GALNAC5Q9BVH7 336 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 NDRG2Q9UN36 371 aaKnown RBP9.3□□□□□ -0.92
COL6A3-201ENST00000295550 GGT3PA6NGU5 568 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 AGAP14A8MT82 685 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 TSPAN6O43657 245 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 PRICKLE3O43900 615 aaPredicted RBP9.3□□□□□ -0.92
COL6A3-201ENST00000295550 MEF2AQ02078 507 aaPredicted RBP9.3□□□□□ -0.92
COL6A3-201ENST00000295550 INAVAQ3KP66 663 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 PLAG1Q6DJT9 500 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 CELF5Q8N6W0 485 aaKnown RBP9.3□□□□□ -0.92
COL6A3-201ENST00000295550 TMIGD2Q96BF3 282 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 SGTBQ96EQ0 304 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 TRMT2BQ96GJ1 504 aaKnown RBP9.3□□□□□ -0.92
COL6A3-201ENST00000295550 LRIG1Q96JA1 1093 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 PUS1Q9Y606 427 aaKnown RBP eCLIP9.3□□□□□ -0.92
COL6A3-201ENST00000295550 COL11A2P13942 1736 aaPredicted RBP9.3□□□□□ -0.92
COL6A3-201ENST00000295550 LEFTY2O00292 366 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 SCO2O43819 266 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 RAB35Q15286 201 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 PAGE3Q5JUK9 113 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 LRRTM3Q86VH5 581 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 RDH10Q8IZV5 341 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 STEAP2Q8NFT2 490 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 IGSF21Q96ID5 467 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 SMCO4Q9NRQ5 59 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 APOA2P02652 100 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 HEXBP07686 556 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 ADORA3P0DMS8 318 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 TMEM225BP0DP42 221 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 ARHGAP19Q14CB8 494 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 ZNF805Q5CZA5 627 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 CES4AQ5XG92 561 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 GCDHQ92947 438 aaPredicted RBP9.3□□□□□ -0.92
COL6A3-201ENST00000295550 RDH14Q9HBH5 336 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 B4GALT7Q9UBV7 327 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 A8MU76 341 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 GNSP15586 552 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 C2orf27AQ580R0 203 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 MEX3BQ6ZN04 569 aaKnown RBP9.3□□□□□ -0.92
COL6A3-201ENST00000295550 ZNF546Q86UE3 836 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 SYNPRQ8TBG9 265 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 MIB2Q96AX9 1013 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 PLEKHJ1Q9NW61 149 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 COL4A1P02462 1669 aa9.3□□□□□ -0.92
COL6A3-201ENST00000295550 A0A1B0GVG6 124 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 P2RX6O15547 441 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 RAB3DO95716 219 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 LRFN4Q6PJG9 635 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 SMIM15Q7Z3B0 74 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 BAGE3Q86Y29 109 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 BAGE2Q86Y30 109 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 SULF2Q8IWU5 870 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 OR52P1PQ8NH57 321 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 CHTF18Q8WVB6 975 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 UBXN10Q96LJ8 280 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 UHRF1Q96T88 793 aaPredicted RBP9.29□□□□□ -0.92
COL6A3-201ENST00000295550 SYT17Q9BSW7 474 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 AK6Q9Y3D8 172 aaKnown RBP9.29□□□□□ -0.92
COL6A3-201ENST00000295550 YLPM1P49750 1951 aaKnown RBP9.29□□□□□ -0.92
COL6A3-201ENST00000295550 GJB5O95377 273 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 ALDOCP09972 364 aaKnown RBP9.29□□□□□ -0.92
COL6A3-201ENST00000295550 ZDHHC11BP0C7U3 371 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 ZNF865P0CJ78 1059 aaPredicted RBP9.29□□□□□ -0.92
COL6A3-201ENST00000295550 IRF2P14316 349 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 KDELR2P33947 212 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 RAP2BP61225 183 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 LINC01599Q8WXQ3 324 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 METTL2AQ96IZ6 378 aaKnown RBP9.29□□□□□ -0.92
COL6A3-201ENST00000295550 ADAM19Q9H013 955 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 NTN4Q9HB63 628 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 GTF3C1Q12789 2109 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 TP53I11O14683 189 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 ICMTO60725 284 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 TXNDC12O95881 172 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 ADARB1P78563 741 aaKnown RBP9.29□□□□□ -0.92
COL6A3-201ENST00000295550 LMAN2Q12907 356 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 C18orf21Q32NC0 220 aaPredicted RBP9.29□□□□□ -0.92
COL6A3-201ENST00000295550 TECPR1Q7Z6L1 1165 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 SCD5Q86SK9 330 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 Q8N9G6 341 aaPredicted RBP9.29□□□□□ -0.92
COL6A3-201ENST00000295550 SLC7A13Q8TCU3 470 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 TBC1D20Q96BZ9 403 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 SDHAF2Q9NX18 166 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 GVINP1Q7Z2Y8 2422 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 A0A1W2PQ09 198 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 ENDOUP21128 410 aaKnown RBP9.29□□□□□ -0.92
COL6A3-201ENST00000295550 TAGLNQ01995 201 aaKnown RBP9.29□□□□□ -0.92
COL6A3-201ENST00000295550 DEFB115Q30KQ5 88 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 TMEM35AQ53FP2 167 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 SPRED1Q7Z699 444 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 NUP43Q8NFH3 380 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 NETO1Q8TDF5 533 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 OR2M2Q96R28 347 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 IL20RAQ9UHF4 553 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 LEFTY1O75610 366 aa9.29□□□□□ -0.92
COL6A3-201ENST00000295550 HLA-EP13747 358 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms