RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 A0A0A6YYH2 397 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 SERTM1A2A2V5 107 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 A6NJ64 397 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 CDK2AP1O14519 115 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 YY2O15391 372 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 GPR39O43194 453 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 SNX3O60493 162 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 RDH16O75452 317 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 PITPNBP48739 271 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 OLFML1Q6UWY5 402 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 BTNL3Q6UXE8 466 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 SH3RF1Q7Z6J0 888 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 SYT14Q8NB59 555 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 SDSLQ96GA7 329 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 BTBD2Q9BX70 525 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 TTTY10Q9BZA0 68 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 UBQLN4Q9NRR5 601 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 TRAPPC2LQ9UL33 140 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 COPS3Q9UNS2 423 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 ACTL7AQ9Y615 435 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 HS3ST3A1Q9Y663 406 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 SMCHD1A6NHR9 2005 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 ADAP00813 363 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 CHRM5P08912 532 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-217ENST00000637988 ERP29P30040 261 aaKnown RBP5.77□□□□□ -1.49
SCN1A-217ENST00000637988 LCN1P31025 176 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 SNRPD2P62316 118 aaKnown RBP5.77□□□□□ -1.49
SCN1A-217ENST00000637988 KIAA1614Q5VZ46 1190 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 KLHDC10Q6PID8 442 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 DND1Q8IYX4 353 aaKnown RBP5.77□□□□□ -1.49
SCN1A-217ENST00000637988 BPIFA2Q96DR5 249 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 F2RL3Q96RI0 385 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 GPR22Q99680 433 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 ERVK13-1Q9NX77 482 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 SLC5A6Q9Y289 635 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 NUDT19A8MXV4 375 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 KCNK2O95069 426 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 NXPH2O95156 264 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 UCHL1P09936 223 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 CD36P16671 472 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 CD70P32970 193 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 ETV5P41161 510 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 GCGRP47871 477 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 NPBWR1P48145 328 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 TUBA1BP68363 451 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 TUBA4AP68366 448 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 CYCSP99999 105 aaKnown RBP5.77□□□□□ -1.49
SCN1A-217ENST00000637988 OR2A2Q6IF42 318 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 TUBA1AQ71U36 451 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 WFDC8Q8IUA0 241 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 SLC39A11Q8N1S5 342 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 MBOAT4Q96T53 435 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 C12orf49Q9H741 205 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 STARD5Q9NSY2 213 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 ZNF346Q9UL40 294 aaKnown RBP5.77□□□□□ -1.49
SCN1A-217ENST00000637988 NME7Q9Y5B8 376 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 PCDHGA1Q9Y5H4 931 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-217ENST00000637988 OTOFQ9HC10 1997 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 RTTNQ86VV8 2226 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 CAPN3P20807 821 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 CSN1S1P47710 185 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 SSTP61278 116 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 GNB1P62873 340 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 DEFB103AP81534 67 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 CA9Q16790 459 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 HTR3DQ70Z44 454 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 AAED1Q7RTV5 226 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 PIWIL3Q7Z3Z3 882 aaKnown RBP5.77□□□□□ -1.49
SCN1A-217ENST00000637988 KMT5CQ86Y97 462 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 TRMT61AQ96FX7 289 aaKnown RBP5.77□□□□□ -1.49
SCN1A-217ENST00000637988 LCORQ96JN0 433 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-217ENST00000637988 ZNF337Q9Y3M9 751 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 C5P01031 1676 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 TUSC2O75896 110 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 GOSR1O95249 250 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 MAS1P04201 325 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 SLC35E2BP0CK96 405 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 TAS2R31P59538 309 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 NTHL1P78549 312 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 FXNQ16595 210 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 SFRP5Q5T4F7 317 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 UGT2A3Q6UWM9 527 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 DLK2Q6UY11 383 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 OR52N2Q8NGI0 321 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 ACOT11Q8WXI4 607 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-217ENST00000637988 ST8SIA2Q92186 375 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 DPF1Q92782 380 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 FOXRED1Q96CU9 486 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-217ENST00000637988 SLC41A3Q96GZ6 507 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 ITPAQ9BY32 194 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 PECRQ9BY49 303 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 CXorf56Q9H5V9 222 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 KCMF1Q9P0J7 381 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 GALPQ9UBC7 116 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 CBLCQ9ULV8 474 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 C15orf41Q9Y2V0 281 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 A0A1W2PP18 115 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 A0A1W2PPV4 95 aa5.77□□□□□ -1.49
SCN1A-217ENST00000637988 SMAD9O15198 467 aaKnown RBP5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms