RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 H3BML4 177 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 LINC01387J3KSC0 135 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 GTPBP1O00178 669 aaKnown RBP13.16□□□□□ -0.3
VRK3-206ENST00000594090 ZNF264O43296 627 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 CLDN14O95500 239 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 PEPDP12955 493 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 POU3F2P20265 443 aaPredicted RBP13.16□□□□□ -0.3
VRK3-206ENST00000594090 CHRNB4P30926 498 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 ADH7P40394 386 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 CRATP43155 626 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 P2RX1P51575 399 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 ZNF41P51814 821 aaPredicted RBP13.16□□□□□ -0.3
VRK3-206ENST00000594090 DSTNP60981 165 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 CHRNEQ04844 493 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 SRYQ05066 204 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 FGFBP1Q14512 234 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 SF3B4Q15427 424 aaKnown RBP eCLIP13.16□□□□□ -0.3
VRK3-206ENST00000594090 BCL2A1Q16548 175 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 RIPPLY2Q5TAB7 128 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 NSUN5P2Q63ZY6 315 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 LRRC74BQ6ZQY2 392 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 LACC1Q8IV20 430 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 CCDC71Q8IV32 467 aaPredicted RBP13.16□□□□□ -0.3
VRK3-206ENST00000594090 TMCO5AQ8N6Q1 288 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 OR10Q1Q8NGQ4 319 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 ASB5Q8WWX0 329 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 ZBTB8AQ96BR9 441 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 TRIB1Q96RU8 372 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 TUBA1CQ9BQE3 449 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 QRSL1Q9H0R6 528 aaKnown RBP13.16□□□□□ -0.3
VRK3-206ENST00000594090 RUBCNLQ9H714 662 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 SLC25A37Q9NYZ2 338 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 SLAMF8Q9P0V8 285 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 P2RX2Q9UBL9 471 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 Q9UFV3 132 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 ICAM5Q9UMF0 924 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 ZNF337Q9Y3M9 751 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 KLF2Q9Y5W3 355 aaPredicted RBP13.16□□□□□ -0.3
VRK3-206ENST00000594090 KIAA1549Q9HCM3 1950 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 ICE1Q9Y2F5 2266 aa13.16□□□□□ -0.3
VRK3-206ENST00000594090 MED12Q93074 2177 aa13.15□□□□□ -0.3
VRK3-206ENST00000594090 TRBV5-3A0A0A0MS03 114 aa13.15□□□□□ -0.3
VRK3-206ENST00000594090 CD8B2A6NJW9 211 aa13.15□□□□□ -0.3
VRK3-206ENST00000594090 PRSS44E7EML9 344 aa13.15□□□□□ -0.3
VRK3-206ENST00000594090 CLIC1O00299 241 aa13.15□□□□□ -0.3
VRK3-206ENST00000594090 NUDT14O95848 222 aa13.15□□□□□ -0.3
VRK3-206ENST00000594090 NR2F1P10589 423 aa13.15□□□□□ -0.3
VRK3-206ENST00000594090 SKP2Q13309 424 aa13.15□□□□□ -0.3
VRK3-206ENST00000594090 RGNQ15493 299 aa13.15□□□□□ -0.3
VRK3-206ENST00000594090 MAPK11Q15759 364 aa13.15□□□□□ -0.3
VRK3-206ENST00000594090 HIST2H2BCQ6DN03 193 aa13.15□□□□□ -0.3
VRK3-206ENST00000594090 HMGN2P46Q86SG4 172 aa13.15□□□□□ -0.3
VRK3-206ENST00000594090 MSRB3Q8IXL7 192 aa13.15□□□□□ -0.3
VRK3-206ENST00000594090 GTPBP8Q8N3Z3 284 aaPredicted RBP13.15□□□□□ -0.3
VRK3-206ENST00000594090 TOR1AIP2Q8NFQ8 470 aa13.15□□□□□ -0.3
VRK3-206ENST00000594090 CA5BP1Q8WTZ4 195 aa13.15□□□□□ -0.3
VRK3-206ENST00000594090 ZG16BQ96DA0 208 aa13.15□□□□□ -0.3
VRK3-206ENST00000594090 RNF145Q96MT1 663 aa13.15□□□□□ -0.3
VRK3-206ENST00000594090 NPAS1Q99742 590 aa13.15□□□□□ -0.3
VRK3-206ENST00000594090 RAD21L1Q9H4I0 556 aa13.15□□□□□ -0.3
VRK3-206ENST00000594090 THUMPD1Q9NXG2 353 aaKnown RBP13.15□□□□□ -0.3
VRK3-206ENST00000594090 VAPAQ9P0L0 249 aa13.15□□□□□ -0.3
VRK3-206ENST00000594090 KLHL14Q9P2G3 628 aa13.15□□□□□ -0.3
VRK3-206ENST00000594090 LEF1Q9UJU2 399 aaPredicted RBP13.15□□□□□ -0.3
VRK3-206ENST00000594090 MBD3L4A6NDZ8 208 aaPredicted RBP13.14□□□□□ -0.31
VRK3-206ENST00000594090 MBD3L3A6NE82 208 aaPredicted RBP13.14□□□□□ -0.31
VRK3-206ENST00000594090 MBD3L5A6NJ08 208 aaPredicted RBP13.14□□□□□ -0.31
VRK3-206ENST00000594090 DYNC1I1O14576 645 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 SEC14L5O43304 696 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 EIF4E2O60573 245 aaKnown RBP13.14□□□□□ -0.31
VRK3-206ENST00000594090 TOXO94900 526 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 CSTAP01040 98 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 BCHEP06276 602 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 LINGO3P0C6S8 592 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 RPS4Y1P22090 263 aaKnown RBP13.14□□□□□ -0.31
VRK3-206ENST00000594090 COL8A1P27658 744 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 HTR1EP28566 365 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 CCR4P51679 360 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 CLDN20P56880 219 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 FOXF1Q12946 379 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 FADDQ13158 208 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 EIF3MQ7L2H7 374 aaKnown RBP13.14□□□□□ -0.31
VRK3-206ENST00000594090 ADGRE4PQ86SQ3 457 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 UBQLNLQ8IYU4 475 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 FAM71CQ8NEG0 241 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 TNIP2Q8NFZ5 429 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 MBD3L2Q8NHZ7 208 aaPredicted RBP13.14□□□□□ -0.31
VRK3-206ENST00000594090 TSPEARQ8WU66 669 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 C10orf82Q8WW14 230 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 SMPDL3BQ92485 455 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 CALHM2Q9HA72 323 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 MRGBPQ9NV56 204 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 CALML5Q9NZT1 146 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 CLCF1Q9UBD9 225 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 SLC35A3Q9Y2D2 325 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 NDUFAF1Q9Y375 327 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 GMEB1Q9Y692 573 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 AP4B1Q9Y6B7 739 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 PTPN13Q12923 2485 aa13.14□□□□□ -0.31
VRK3-206ENST00000594090 DSPPQ9NZW4 1301 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms