RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 MRPL39Q9NYK5 338 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 PRO0461Q9UI25 63 aa3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 XPO7Q9UIA9 1087 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 RIMS3Q9UJD0 308 aa3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 WDR45Q9Y484 360 aa3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 USP16Q9Y5T5 823 aa3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 CARMIL1Q5VZK9 1371 aa3.05□□□□□ -1.92
SMCHD1-204ENST00000581226 IGHV7-81A0A0B4J1V7 117 aa3.05□□□□□ -1.92
SMCHD1-204ENST00000581226 FCN1O00602 326 aa3.05□□□□□ -1.92
SMCHD1-204ENST00000581226 ZNF861PO60384 105 aa3.05□□□□□ -1.92
SMCHD1-204ENST00000581226 MMP23AO75900 390 aa3.05□□□□□ -1.92
SMCHD1-204ENST00000581226 CLUP10909 449 aa3.05□□□□□ -1.92
SMCHD1-204ENST00000581226 PDHBP11177 359 aa3.05□□□□□ -1.92
SMCHD1-204ENST00000581226 CCND2P30279 289 aa3.05□□□□□ -1.92
SMCHD1-204ENST00000581226 ADRA1AP35348 466 aa3.05□□□□□ -1.92
SMCHD1-204ENST00000581226 CD86P42081 329 aa3.05□□□□□ -1.92
SMCHD1-204ENST00000581226 KIR2DS2P43631 304 aa3.05□□□□□ -1.92
SMCHD1-204ENST00000581226 CAMLGP49069 296 aa3.05□□□□□ -1.92
SMCHD1-204ENST00000581226 EGFEM1PQ0D2K5 195 aa3.05□□□□□ -1.92
SMCHD1-204ENST00000581226 ZNF311Q5JNZ3 666 aa3.05□□□□□ -1.92
SMCHD1-204ENST00000581226 CELF3Q5SZQ8 465 aaKnown RBP3.05□□□□□ -1.92
SMCHD1-204ENST00000581226 NIPAL3Q6P499 406 aa3.05□□□□□ -1.92
SMCHD1-204ENST00000581226 ZNF530Q6P9A1 599 aaPredicted RBP3.05□□□□□ -1.92
SMCHD1-204ENST00000581226 ANKRD37Q7Z713 158 aa3.05□□□□□ -1.92
SMCHD1-204ENST00000581226 C17orf82Q86X59 251 aaPredicted RBP3.05□□□□□ -1.92
SMCHD1-204ENST00000581226 ALLCQ8N6M5 410 aa3.05□□□□□ -1.92
SMCHD1-204ENST00000581226 SELENOMQ8WWX9 145 aa3.05□□□□□ -1.92
SMCHD1-204ENST00000581226 TESK2Q96S53 571 aa3.05□□□□□ -1.92
SMCHD1-204ENST00000581226 GSDMCQ9BYG8 508 aa3.05□□□□□ -1.92
SMCHD1-204ENST00000581226 OR51J1Q9H342 316 aa3.05□□□□□ -1.92
SMCHD1-204ENST00000581226 GLIPR2Q9H4G4 154 aa3.05□□□□□ -1.92
SMCHD1-204ENST00000581226 MAB21L2Q9Y586 359 aa3.05□□□□□ -1.92
SMCHD1-204ENST00000581226 RAI1Q7Z5J4 1906 aaPredicted RBP3.05□□□□□ -1.92
SMCHD1-204ENST00000581226 LOC100131303A0A0U1RQF7 123 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 PANO1I0J062 215 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 SDHDO14521 159 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 JAK2O60674 1132 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 TIMP1P01033 207 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 HPNP05981 417 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 KIF5BP33176 963 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 EPHX2P34913 555 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 BDKRB1P46663 353 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 CAV2P51636 162 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 ATXN7L3Q14CW9 347 aaPredicted RBP3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 NDUFA9Q16795 377 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 CFAP221Q4G0U5 840 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 EOGTQ5NDL2 527 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 IGFL2Q6UWQ7 119 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 CATSPER4Q7RTX7 472 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 ZSCAN30Q86W11 494 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 SKA3Q8IX90 412 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 GCNT2Q8N0V5 402 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 RNF175Q8N4F7 328 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 OR9A1PQ8NGU1 263 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 OR5B2Q96R09 309 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 CRNKL1Q9BZJ0 848 aaKnown RBP3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 CHIAQ9BZP6 476 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 RHOJQ9H4E5 214 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 DHX33Q9H6R0 707 aaKnown RBP3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 CD274Q9NZQ7 290 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 ANAPC7Q9UJX3 599 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 ODF2LQ9ULJ1 636 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 UBQLN1Q9UMX0 589 aaKnown RBP3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 CHMP2BQ9UQN3 213 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 SPACA6W5XKT8 324 aa3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 PRRC2AP48634 2157 aaKnown RBP3.04□□□□□ -1.92
SMCHD1-204ENST00000581226 IGHV1OR15-1A0A075B7D0 117 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 HSFX4A0A1B0GTS1 333 aaPredicted RBP3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 HSFX3A0A1B0GWH4 333 aaPredicted RBP3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 PINLYPA6NC86 204 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 TRIM49D1C9J1S8 452 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 ABCD4O14678 606 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 STX7O15400 261 aaKnown RBP3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 EFNA2O43921 213 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 SCGB2A1O75556 95 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 BBOX1O75936 387 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 OR4F21O95013 312 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 NR2C1P13056 603 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 HOXD10P28358 340 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 HLCSP50747 726 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 TIMM10P62072 90 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 TLE4Q04727 773 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 MAPK6Q16659 721 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 LINC01620Q4KN68 170 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 LRRC8BQ6P9F7 803 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 UNC5DQ6UXZ4 953 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 LCA5Q86VQ0 697 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 OR2AP1Q8NGE2 309 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 TAF4BQ92750 862 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 ZNF799Q96GE5 643 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 MS4A14Q96JA4 679 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 AKR1E2Q96JD6 320 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 CYP2S1Q96SQ9 504 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 TXN2Q99757 166 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 HES7Q9BYE0 225 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 SMC3Q9UQE7 1217 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 CHD4Q14839 1912 aa3.03□□□□□ -1.92
SMCHD1-204ENST00000581226 TDRD6O60522 2096 aaKnown RBP3.02□□□□□ -1.93
SMCHD1-204ENST00000581226 H3BMQ9 156 aa3.02□□□□□ -1.93
SMCHD1-204ENST00000581226 ZNF264O43296 627 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms