RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 OR7G2Q8NG99 324 aa15.78■□□□□ 0.12
CLK3-227ENST00000570296 FBF1Q8TES7 1133 aa15.78■□□□□ 0.12
CLK3-227ENST00000570296 LRRC39Q96DD0 335 aa15.78■□□□□ 0.12
CLK3-227ENST00000570296 BAG1Q99933 345 aaPredicted RBP15.78■□□□□ 0.12
CLK3-227ENST00000570296 RAB1BQ9H0U4 201 aa15.78■□□□□ 0.12
CLK3-227ENST00000570296 CDC42EP4Q9H3Q1 356 aaKnown RBP15.78■□□□□ 0.12
CLK3-227ENST00000570296 SENP1Q9P0U3 644 aa15.78■□□□□ 0.12
CLK3-227ENST00000570296 TRAF6Q9Y4K3 522 aa15.78■□□□□ 0.12
CLK3-227ENST00000570296 A0A1W2PR80 420 aa15.77■□□□□ 0.12
CLK3-227ENST00000570296 ZNF724A8MTY0 619 aa15.77■□□□□ 0.12
CLK3-227ENST00000570296 STMN1P16949 149 aa15.77■□□□□ 0.12
CLK3-227ENST00000570296 ENPP1P22413 925 aa15.77■□□□□ 0.12
CLK3-227ENST00000570296 SERPINF1P36955 418 aa15.77■□□□□ 0.12
CLK3-227ENST00000570296 PIK3CGP48736 1102 aa15.77■□□□□ 0.12
CLK3-227ENST00000570296 UBA52P62987 128 aaKnown RBP15.77■□□□□ 0.12
CLK3-227ENST00000570296 CCNIQ14094 377 aa15.77■□□□□ 0.12
CLK3-227ENST00000570296 GRAMD1BQ3KR37 738 aa15.77■□□□□ 0.12
CLK3-227ENST00000570296 FRG2Q64ET8 278 aa15.77■□□□□ 0.12
CLK3-227ENST00000570296 OR7E24Q6IFN5 339 aa15.77■□□□□ 0.12
CLK3-227ENST00000570296 PDIK1LQ8N165 341 aa15.77■□□□□ 0.12
CLK3-227ENST00000570296 ZDHHC22Q8N966 263 aa15.77■□□□□ 0.12
CLK3-227ENST00000570296 FRG2BQ96QU4 278 aa15.77■□□□□ 0.12
CLK3-227ENST00000570296 IPPKQ9H8X2 491 aa15.77■□□□□ 0.12
CLK3-227ENST00000570296 ESM1Q9NQ30 184 aa15.77■□□□□ 0.12
CLK3-227ENST00000570296 FBXO9Q9UK97 447 aaPredicted RBP15.77■□□□□ 0.12
CLK3-227ENST00000570296 TEX264Q9Y6I9 313 aa15.77■□□□□ 0.12
CLK3-227ENST00000570296 CCT8L1PA6NM43 557 aa15.76■□□□□ 0.11
CLK3-227ENST00000570296 B9A039 149 aa15.76■□□□□ 0.11
CLK3-227ENST00000570296 ALG1L2C9J202 215 aa15.76■□□□□ 0.11
CLK3-227ENST00000570296 DNALI1O14645 258 aaPredicted RBP15.76■□□□□ 0.11
CLK3-227ENST00000570296 CLDN9O95484 217 aa15.76■□□□□ 0.11
CLK3-227ENST00000570296 IDH3GP51553 393 aaPredicted RBP15.76■□□□□ 0.11
CLK3-227ENST00000570296 RASGEF1BQ0VAM2 473 aa15.76■□□□□ 0.11
CLK3-227ENST00000570296 RIN1Q13671 783 aa15.76■□□□□ 0.11
CLK3-227ENST00000570296 GTF2H2Q13888 395 aa15.76■□□□□ 0.11
CLK3-227ENST00000570296 TRIP10Q15642 601 aa15.76■□□□□ 0.11
CLK3-227ENST00000570296 ZKSCAN8Q15776 578 aaPredicted RBP15.76■□□□□ 0.11
CLK3-227ENST00000570296 FBXW9Q5XUX1 488 aa15.76■□□□□ 0.11
CLK3-227ENST00000570296 GTF2H2CQ6P1K8 395 aa15.76■□□□□ 0.11
CLK3-227ENST00000570296 GALNT5Q7Z7M9 940 aa15.76■□□□□ 0.11
CLK3-227ENST00000570296 FAM9CQ8IZT9 166 aa15.76■□□□□ 0.11
CLK3-227ENST00000570296 ZNF786Q8N393 782 aa15.76■□□□□ 0.11
CLK3-227ENST00000570296 C1QTNF6Q9BXI9 259 aa15.76■□□□□ 0.11
CLK3-227ENST00000570296 COQ10BQ9H8M1 238 aa15.76■□□□□ 0.11
CLK3-227ENST00000570296 PDE5AO76074 875 aa15.75■□□□□ 0.11
CLK3-227ENST00000570296 SLU7O95391 586 aaKnown RBP15.75■□□□□ 0.11
CLK3-227ENST00000570296 ERCC1P07992 297 aaPredicted RBP15.75■□□□□ 0.11
CLK3-227ENST00000570296 MSMBP08118 114 aa15.75■□□□□ 0.11
CLK3-227ENST00000570296 MTHFD2P13995 350 aa15.75■□□□□ 0.11
CLK3-227ENST00000570296 DDX5P17844 614 aaKnown RBP15.75■□□□□ 0.11
CLK3-227ENST00000570296 RFX3P48380 749 aa15.75■□□□□ 0.11
CLK3-227ENST00000570296 RAC3P60763 192 aa15.75■□□□□ 0.11
CLK3-227ENST00000570296 SLC18A2Q05940 514 aa15.75■□□□□ 0.11
CLK3-227ENST00000570296 GALNT1Q10472 559 aaPredicted RBP15.75■□□□□ 0.11
CLK3-227ENST00000570296 FBLN7Q53RD9 439 aa15.75■□□□□ 0.11
CLK3-227ENST00000570296 C1QTNF12Q5T7M4 302 aa15.75■□□□□ 0.11
CLK3-227ENST00000570296 GOLGA7Q7Z5G4 137 aa15.75■□□□□ 0.11
CLK3-227ENST00000570296 TMEM139Q8IV31 216 aa15.75■□□□□ 0.11
CLK3-227ENST00000570296 GRK7Q8WTQ7 553 aa15.75■□□□□ 0.11
CLK3-227ENST00000570296 NEU4Q8WWR8 484 aaPredicted RBP15.75■□□□□ 0.11
CLK3-227ENST00000570296 ZNF75CPQ92670 426 aaPredicted RBP15.75■□□□□ 0.11
CLK3-227ENST00000570296 MUS81Q96NY9 551 aa15.75■□□□□ 0.11
CLK3-227ENST00000570296 PLK3Q9H4B4 646 aa15.75■□□□□ 0.11
CLK3-227ENST00000570296 UNKLQ9H9P5 680 aaKnown RBP15.75■□□□□ 0.11
CLK3-227ENST00000570296 NMRAL1Q9HBL8 299 aa15.75■□□□□ 0.11
CLK3-227ENST00000570296 GIMAP4Q9NUV9 329 aa15.75■□□□□ 0.11
CLK3-227ENST00000570296 TAS2R16Q9NYV7 291 aa15.75■□□□□ 0.11
CLK3-227ENST00000570296 WNK2Q9Y3S1 2297 aa15.75■□□□□ 0.11
CLK3-227ENST00000570296 IGHV3-15A0A0B4J1V0 119 aa15.74■□□□□ 0.11
CLK3-227ENST00000570296 GOLGA6L10A0A0M3HER8 536 aa15.74■□□□□ 0.11
CLK3-227ENST00000570296 POM121CA8CG34 1229 aa15.74■□□□□ 0.11
CLK3-227ENST00000570296 KIF2AO00139 706 aaPredicted RBP15.74■□□□□ 0.11
CLK3-227ENST00000570296 CYTIPO60759 359 aa15.74■□□□□ 0.11
CLK3-227ENST00000570296 NGFRP08138 427 aa15.74■□□□□ 0.11
CLK3-227ENST00000570296 LINGO3P0C6S8 592 aa15.74■□□□□ 0.11
CLK3-227ENST00000570296 IFNGR1P15260 489 aa15.74■□□□□ 0.11
CLK3-227ENST00000570296 ZFP36P26651 326 aaKnown RBP15.74■□□□□ 0.11
CLK3-227ENST00000570296 CXCR5P32302 372 aa15.74■□□□□ 0.11
CLK3-227ENST00000570296 GP5P40197 560 aa15.74■□□□□ 0.11
CLK3-227ENST00000570296 ZNHIT3Q15649 155 aaPredicted RBP15.74■□□□□ 0.11
CLK3-227ENST00000570296 EFNB3Q15768 340 aa15.74■□□□□ 0.11
CLK3-227ENST00000570296 GABRA6Q16445 453 aa15.74■□□□□ 0.11
CLK3-227ENST00000570296 TMEM176BQ3YBM2 270 aaPredicted RBP15.74■□□□□ 0.11
CLK3-227ENST00000570296 UBE2J2Q8N2K1 259 aa15.74■□□□□ 0.11
CLK3-227ENST00000570296 ZFP90Q8TF47 636 aa15.74■□□□□ 0.11
CLK3-227ENST00000570296 ZNF300Q96RE9 604 aaPredicted RBP15.74■□□□□ 0.11
CLK3-227ENST00000570296 GPR22Q99680 433 aa15.74■□□□□ 0.11
CLK3-227ENST00000570296 PKP2Q99959 881 aa15.74■□□□□ 0.11
CLK3-227ENST00000570296 C3orf14Q9HBI5 128 aa15.74■□□□□ 0.11
CLK3-227ENST00000570296 A0A087WV62 115 aa15.73■□□□□ 0.11
CLK3-227ENST00000570296 SYCE1LA8MT33 242 aa15.73■□□□□ 0.11
CLK3-227ENST00000570296 C9JVG2 144 aa15.73■□□□□ 0.11
CLK3-227ENST00000570296 EFNA2O43921 213 aa15.73■□□□□ 0.11
CLK3-227ENST00000570296 SLITRK5O94991 958 aa15.73■□□□□ 0.11
CLK3-227ENST00000570296 ESRRBO95718 433 aa15.73■□□□□ 0.11
CLK3-227ENST00000570296 BCL10O95999 233 aa15.73■□□□□ 0.11
CLK3-227ENST00000570296 MPIP34949 423 aa15.73■□□□□ 0.11
CLK3-227ENST00000570296 FOXF1Q12946 379 aa15.73■□□□□ 0.11
CLK3-227ENST00000570296 IFT88Q13099 833 aa15.73■□□□□ 0.11
CLK3-227ENST00000570296 TTC19Q6DKK2 380 aaPredicted RBP15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms