RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 IGHV3-9P01782 118 aa10.3□□□□□ -0.76
CLK3-222ENST00000568232 LTA4HP09960 611 aaKnown RBP10.3□□□□□ -0.76
CLK3-222ENST00000568232 COX5AP20674 150 aa10.3□□□□□ -0.76
CLK3-222ENST00000568232 CDH15P55291 814 aa10.3□□□□□ -0.76
CLK3-222ENST00000568232 FRG2Q64ET8 278 aa10.3□□□□□ -0.76
CLK3-222ENST00000568232 TTC19Q6DKK2 380 aaPredicted RBP10.3□□□□□ -0.76
CLK3-222ENST00000568232 DEF8Q6ZN54 512 aa10.3□□□□□ -0.76
CLK3-222ENST00000568232 TRABD2AQ86V40 505 aa10.3□□□□□ -0.76
CLK3-222ENST00000568232 ZBTB8AQ96BR9 441 aa10.3□□□□□ -0.76
CLK3-222ENST00000568232 LRRC39Q96DD0 335 aa10.3□□□□□ -0.76
CLK3-222ENST00000568232 SH3YL1Q96HL8 342 aaPredicted RBP10.3□□□□□ -0.76
CLK3-222ENST00000568232 FRG2BQ96QU4 278 aa10.3□□□□□ -0.76
CLK3-222ENST00000568232 ZNF300Q96RE9 604 aaPredicted RBP10.3□□□□□ -0.76
CLK3-222ENST00000568232 PSD2Q9BQI7 771 aa10.3□□□□□ -0.76
CLK3-222ENST00000568232 ZNF747Q9BV97 191 aa10.3□□□□□ -0.76
CLK3-222ENST00000568232 FAIM2Q9BWQ8 316 aa10.3□□□□□ -0.76
CLK3-222ENST00000568232 NMRAL1Q9HBL8 299 aa10.3□□□□□ -0.76
CLK3-222ENST00000568232 GP6Q9HCN6 339 aa10.3□□□□□ -0.76
CLK3-222ENST00000568232 SENP1Q9P0U3 644 aa10.3□□□□□ -0.76
CLK3-222ENST00000568232 RNF14Q9UBS8 474 aa10.3□□□□□ -0.76
CLK3-222ENST00000568232 TRAF6Q9Y4K3 522 aa10.3□□□□□ -0.76
CLK3-222ENST00000568232 PLCE1Q9P212 2302 aa10.3□□□□□ -0.76
CLK3-222ENST00000568232 GXYLT2A0PJZ3 443 aa10.29□□□□□ -0.76
CLK3-222ENST00000568232 STAMBPO95630 424 aa10.29□□□□□ -0.76
CLK3-222ENST00000568232 IL3P08700 152 aa10.29□□□□□ -0.76
CLK3-222ENST00000568232 GFAPP14136 432 aa10.29□□□□□ -0.76
CLK3-222ENST00000568232 ZNF41P51814 821 aaPredicted RBP10.29□□□□□ -0.76
CLK3-222ENST00000568232 CHN2P52757 468 aa10.29□□□□□ -0.76
CLK3-222ENST00000568232 DVL1P1P54792 670 aaPredicted RBP10.29□□□□□ -0.76
CLK3-222ENST00000568232 HILS1P60008 231 aa10.29□□□□□ -0.76
CLK3-222ENST00000568232 PHC1P78364 1004 aa10.29□□□□□ -0.76
CLK3-222ENST00000568232 SLC18A2Q05940 514 aa10.29□□□□□ -0.76
CLK3-222ENST00000568232 CCNIQ14094 377 aa10.29□□□□□ -0.76
CLK3-222ENST00000568232 MLC1Q15049 377 aa10.29□□□□□ -0.76
CLK3-222ENST00000568232 TRIP10Q15642 601 aa10.29□□□□□ -0.76
CLK3-222ENST00000568232 TMEM176BQ3YBM2 270 aaPredicted RBP10.29□□□□□ -0.76
CLK3-222ENST00000568232 ARL13AQ5H913 290 aaPredicted RBP10.29□□□□□ -0.76
CLK3-222ENST00000568232 RAPH1Q70E73 1250 aa10.29□□□□□ -0.76
CLK3-222ENST00000568232 SVOPLQ8N434 492 aa10.29□□□□□ -0.76
CLK3-222ENST00000568232 C1orf52Q8N6N3 182 aaKnown RBP10.29□□□□□ -0.76
CLK3-222ENST00000568232 ZNF540Q8NDQ6 660 aa10.29□□□□□ -0.76
CLK3-222ENST00000568232 ATP6V1C2Q8NEY4 427 aa10.29□□□□□ -0.76
CLK3-222ENST00000568232 TRIM58Q8NG06 486 aa10.29□□□□□ -0.76
CLK3-222ENST00000568232 OR4C3Q8NH37 302 aa10.29□□□□□ -0.76
CLK3-222ENST00000568232 HPS1Q92902 700 aa10.29□□□□□ -0.76
CLK3-222ENST00000568232 ATP6V1E2Q96A05 226 aa10.29□□□□□ -0.76
CLK3-222ENST00000568232 RBBP8Q99708 897 aa10.29□□□□□ -0.76
CLK3-222ENST00000568232 RBM4Q9BWF3 364 aaKnown RBP10.29□□□□□ -0.76
CLK3-222ENST00000568232 COQ10BQ9H8M1 238 aa10.29□□□□□ -0.76
CLK3-222ENST00000568232 BCO1Q9HAY6 547 aa10.29□□□□□ -0.76
CLK3-222ENST00000568232 TIGARQ9NQ88 270 aa10.29□□□□□ -0.76
CLK3-222ENST00000568232 NTMQ9P121 344 aa10.29□□□□□ -0.76
CLK3-222ENST00000568232 NOTCH1P46531 2555 aa10.28□□□□□ -0.76
CLK3-222ENST00000568232 CIB4A0PJX0 185 aa10.28□□□□□ -0.76
CLK3-222ENST00000568232 CCT8L1PA6NM43 557 aa10.28□□□□□ -0.76
CLK3-222ENST00000568232 ATP6V1G2-DDX39BF2Z307 99 aa10.28□□□□□ -0.76
CLK3-222ENST00000568232 TACSTD2P09758 323 aa10.28□□□□□ -0.76
CLK3-222ENST00000568232 FNTAP49354 379 aa10.28□□□□□ -0.76
CLK3-222ENST00000568232 ALDH18A1P54886 795 aaKnown RBP10.28□□□□□ -0.76
CLK3-222ENST00000568232 FOXG1P55316 489 aaPredicted RBP10.28□□□□□ -0.76
CLK3-222ENST00000568232 FOXF1Q12946 379 aa10.28□□□□□ -0.76
CLK3-222ENST00000568232 PDIA2Q13087 525 aaKnown RBP10.28□□□□□ -0.76
CLK3-222ENST00000568232 IFT88Q13099 833 aa10.28□□□□□ -0.76
CLK3-222ENST00000568232 MORF4L2Q15014 288 aa10.28□□□□□ -0.76
CLK3-222ENST00000568232 PRSS53Q2L4Q9 553 aa10.28□□□□□ -0.76
CLK3-222ENST00000568232 SHISA2Q6UWI4 295 aa10.28□□□□□ -0.76
CLK3-222ENST00000568232 TMEM107Q6UX40 140 aa10.28□□□□□ -0.76
CLK3-222ENST00000568232 SSX8Q7RTT4 187 aa10.28□□□□□ -0.76
CLK3-222ENST00000568232 SLC46A3Q7Z3Q1 461 aa10.28□□□□□ -0.76
CLK3-222ENST00000568232 ZNF100Q8IYN0 542 aa10.28□□□□□ -0.76
CLK3-222ENST00000568232 FAM9CQ8IZT9 166 aa10.28□□□□□ -0.76
CLK3-222ENST00000568232 LRRC17Q8N6Y2 441 aa10.28□□□□□ -0.76
CLK3-222ENST00000568232 PIK3R3Q92569 461 aa10.28□□□□□ -0.76
CLK3-222ENST00000568232 ZNF75CPQ92670 426 aaPredicted RBP10.28□□□□□ -0.76
CLK3-222ENST00000568232 Q9N2J8 555 aa10.28□□□□□ -0.76
CLK3-222ENST00000568232 MYOZ1Q9NP98 299 aaPredicted RBP10.28□□□□□ -0.76
CLK3-222ENST00000568232 ARMCX1Q9P291 453 aa10.28□□□□□ -0.76
CLK3-222ENST00000568232 KMT2CQ8NEZ4 4911 aaKnown RBP10.27□□□□□ -0.76
CLK3-222ENST00000568232 A0A1W2PNR3 127 aa10.27□□□□□ -0.77
CLK3-222ENST00000568232 SYCE1LA8MT33 242 aa10.27□□□□□ -0.77
CLK3-222ENST00000568232 GOLGA6L6A8MZA4 724 aa10.27□□□□□ -0.77
CLK3-222ENST00000568232 ALG1L2C9J202 215 aa10.27□□□□□ -0.77
CLK3-222ENST00000568232 UPK1AO00322 258 aa10.27□□□□□ -0.77
CLK3-222ENST00000568232 RGS14O43566 566 aa10.27□□□□□ -0.77
CLK3-222ENST00000568232 COQ9O75208 318 aa10.27□□□□□ -0.77
CLK3-222ENST00000568232 OXSR1O95747 527 aaPredicted RBP10.27□□□□□ -0.77
CLK3-222ENST00000568232 PDYNP01213 254 aa10.27□□□□□ -0.77
CLK3-222ENST00000568232 LINGO3P0C6S8 592 aa10.27□□□□□ -0.77
CLK3-222ENST00000568232 GABRA3P34903 492 aa10.27□□□□□ -0.77
CLK3-222ENST00000568232 PRIM2P49643 509 aa10.27□□□□□ -0.77
CLK3-222ENST00000568232 CCNG1P51959 295 aa10.27□□□□□ -0.77
CLK3-222ENST00000568232 ARFIP2P53365 341 aa10.27□□□□□ -0.77
CLK3-222ENST00000568232 ARL4CP56559 192 aa10.27□□□□□ -0.77
CLK3-222ENST00000568232 TRA2BP62995 288 aaKnown RBP10.27□□□□□ -0.77
CLK3-222ENST00000568232 RASGEF1BQ0VAM2 473 aa10.27□□□□□ -0.77
CLK3-222ENST00000568232 UBE2J2Q8N2K1 259 aa10.27□□□□□ -0.77
CLK3-222ENST00000568232 SLC43A2Q8N370 569 aa10.27□□□□□ -0.77
CLK3-222ENST00000568232 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.27□□□□□ -0.77
CLK3-222ENST00000568232 ACTRT2Q8TDY3 377 aa10.27□□□□□ -0.77
CLK3-222ENST00000568232 NSUN5Q96P11 429 aaKnown RBP10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms