RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 OR5M11Q96RB7 305 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 MGLLQ99685 303 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 P2RY13Q9BPV8 354 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 NIPSNAP1Q9BPW8 284 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 CHCHD6Q9BRQ6 235 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 SLC35A5Q9BS91 424 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 MED18Q9BUE0 208 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 EFCAB11Q9BUY7 163 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 BARHL1Q9BZE3 327 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 NUAK2Q9H093 628 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 MIXL1Q9H2W2 232 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 TMEM245Q9H330 911 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 REEP4Q9H6H4 257 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 RNF167Q9H6Y7 350 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 NMNAT1Q9HAN9 279 aaPredicted RBP2.3□□□□□ -2.04
SPG11-223ENST00000560858 ZNF334Q9HCZ1 680 aaPredicted RBP2.3□□□□□ -2.04
SPG11-223ENST00000560858 A4GALTQ9NPC4 353 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 ISYNA1Q9NPH2 558 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 GKN1Q9NS71 199 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 DECR2Q9NUI1 292 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 ACER3Q9NUN7 267 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 IMPAD1Q9NX62 359 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 QPCTLQ9NXS2 382 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 GPR83Q9NYM4 423 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 TAS2R16Q9NYV7 291 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 SPATA7Q9P0W8 599 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 SEC14L4Q9UDX3 406 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 ZNF221Q9UK13 617 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 PNMA8BQ9ULN7 279 aaPredicted RBP2.3□□□□□ -2.04
SPG11-223ENST00000560858 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP2.3□□□□□ -2.04
SPG11-223ENST00000560858 SLC22A14Q9Y267 594 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 CAB39Q9Y376 341 aaPredicted RBP2.3□□□□□ -2.04
SPG11-223ENST00000560858 PCDHGB2Q9Y5G2 931 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 INSL5Q9Y5Q6 135 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 MAU2Q9Y6X3 613 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 COL5A1P20908 1838 aaPredicted RBP2.3□□□□□ -2.04
SPG11-223ENST00000560858 EML5Q05BV3 1969 aa2.3□□□□□ -2.04
SPG11-223ENST00000560858 TP53BP1Q12888 1972 aaPredicted RBP2.3□□□□□ -2.04
SPG11-223ENST00000560858 GOLGB1Q14789 3259 aaKnown RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 NUMA1Q14980 2115 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 A0A087WYN8 130 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 TRBV4-1A0A0J9YWV2 114 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 LOC100506127A0A0U1RQW1 187 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 A0A1W2PQ09 198 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 TRBC2A0A5B9 178 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 TMEM129A0AVI4 362 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 KRT87PA6NCN2 255 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 MGAT4DA6NG13 374 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 TMEM202A6NGA9 273 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 HMX3A6NHT5 357 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 A8MU76 341 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 PDZK1P1A8MUH7 402 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 CENPBD1B2RD01 187 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 B4DXG7 233 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 FAM227AF5H4B4 570 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 J3KTA2 159 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 TLR4O00206 839 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 PSMD9O00233 223 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 FAAHO00519 579 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 CTDSP2O14595 271 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 FFAR1O14842 300 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 PCDH17O14917 1159 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 TSPAN6O43657 245 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 HCN1O60741 890 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 ATG13O75143 517 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 CCNKO75909 580 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 PDE9AO76083 593 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 GADD45GO95257 159 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 PARNO95453 639 aaKnown RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 C1orf105O95561 183 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 CPSF4O95639 269 aaKnown RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 KRT75O95678 551 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 C6orf47O95873 294 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 SLC16A8O95907 504 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 IFNA14P01570 189 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 CXCL10P02778 98 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 IFNW1P05000 195 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 ALPPP05187 535 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 YES1P07947 543 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 HIST1H2AGP0C0S8 130 aaPredicted RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 ERGP11308 486 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 CPEP16870 476 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 RPL17P18621 184 aaKnown RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 HIST1H2ADP20671 130 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 UQCRC2P22695 453 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 CXCR2P25025 360 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 PTBP1P26599 531 aaKnown RBP eCLIP2.29□□□□□ -2.04
SPG11-223ENST00000560858 AQP1P29972 269 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 FGF9P31371 208 aaPredicted RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 GKP32189 559 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 CD70P32970 193 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 CSTF2P33240 577 aaKnown RBP eCLIP2.29□□□□□ -2.04
SPG11-223ENST00000560858 OR1D2P34982 312 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 MMP12P39900 470 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 SOX3P41225 446 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 BDKRB1P46663 353 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 SLC9A3P48764 834 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 STK19P49842 368 aaPredicted RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 NKX2-5P52952 324 aaPredicted RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 CRISP3P54108 245 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms