RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 CSF2P04141 144 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 TSPAN19P0C672 248 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 SLC35E2P0CK97 266 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 PPP5CP53041 499 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 RPS25P62851 125 aaKnown RBP9.83□□□□□ -0.84
CUX1-217ENST00000558836 COL19A1Q14993 1142 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 AMZ1Q400G9 498 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 KLHL12Q53G59 568 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 GHDCQ8N2G8 530 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 ARHGEF39Q8N4T4 335 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 GATSQ8NAP1 163 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 RCBTB1Q8NDN9 531 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 OR51G2Q8NGK0 314 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 OSTF1Q92882 214 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 ABHD8Q96I13 439 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 HSPA12BQ96MM6 686 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 DCLRE1CQ96SD1 692 aaKnown RBP9.83□□□□□ -0.84
CUX1-217ENST00000558836 LRRN3Q9H3W5 708 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 UBE2ZQ9H832 354 aaPredicted RBP9.83□□□□□ -0.84
CUX1-217ENST00000558836 MEPEQ9NQ76 525 aaPredicted RBP9.83□□□□□ -0.84
CUX1-217ENST00000558836 C14orf119Q9NWQ9 140 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 SIDT1Q9NXL6 827 aaKnown RBP9.83□□□□□ -0.84
CUX1-217ENST00000558836 LRIT1Q9P2V4 623 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 A8MU76 341 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 KLF4O43474 513 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 GMFGO60234 142 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 CDRT1O95170 752 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 CLUP10909 449 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 OR1D4P47884 311 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 BCAP31P51572 246 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 FOXL2P58012 376 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 FZD5Q13467 585 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 PGGHGQ32M88 737 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 STEAP3Q658P3 488 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 ZNF554Q86TJ5 538 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 GJD3Q8N144 294 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 CYB561A3Q8NBI2 242 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 NLGN4YQ8NFZ3 816 aaPredicted RBP9.83□□□□□ -0.84
CUX1-217ENST00000558836 OR2T33Q8NG76 320 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 ZDHHC19Q8WVZ1 309 aaPredicted RBP9.83□□□□□ -0.84
CUX1-217ENST00000558836 NELL2Q99435 816 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 FOLH1BQ9HBA9 442 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 FLRT3Q9NZU0 649 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 FBXL4Q9UKA2 621 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 CLCA3PQ9Y6N3 262 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 CACNA1CQ13936 2221 aa9.83□□□□□ -0.84
CUX1-217ENST00000558836 HYKKA2RU49 373 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 CBFA2T3O75081 653 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 GYPBP06028 91 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 THBS1P07996 1170 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 GLULP15104 373 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 SOX6P35712 828 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 STAT5AP42229 794 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 CAPZBP47756 277 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 ELOCQ15369 112 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 TIMM50Q3ZCQ8 353 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 KLHL22Q53GT1 634 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 EIPR1Q53HC9 387 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 PRSS58Q8IYP2 241 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 SIRT6Q8N6T7 355 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 ZNF321PQ8N8H1 164 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 OR4C3Q8NH37 302 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 FANK1Q8TC84 345 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 RELTQ969Z4 430 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 SECISBP2Q96T21 854 aaKnown RBP9.82□□□□□ -0.84
CUX1-217ENST00000558836 MROQ9BYG7 248 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 TBC1D17Q9HA65 648 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 PRTFDC1Q9NRG1 225 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 TXNL4BQ9NX01 149 aaKnown RBP9.82□□□□□ -0.84
CUX1-217ENST00000558836 NDUFB11Q9NX14 153 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 ZNF229Q9UJW7 825 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 LINC00854A0A1B0GVQ3 168 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 UNC119BA6NIH7 251 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 DVL2O14641 736 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 REM1O75628 298 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 NGFRP08138 427 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 MRPL3P09001 348 aaKnown RBP9.82□□□□□ -0.84
CUX1-217ENST00000558836 NME1P15531 152 aaKnown RBP9.82□□□□□ -0.84
CUX1-217ENST00000558836 RPS4Y1P22090 263 aaKnown RBP9.82□□□□□ -0.84
CUX1-217ENST00000558836 AZGP1P25311 298 aaKnown RBP9.82□□□□□ -0.84
CUX1-217ENST00000558836 MAP3K8P41279 467 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 MLLT3P42568 568 aaPredicted RBP9.82□□□□□ -0.84
CUX1-217ENST00000558836 SLC9A3P48764 834 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 WNT4P56705 351 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 BNC1Q01954 994 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 RAB40BQ12829 278 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 MLLT11Q13015 90 aaPredicted RBP9.82□□□□□ -0.84
CUX1-217ENST00000558836 PRTGQ2VWP7 1150 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 GXYLT1Q4G148 440 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 CRTC2Q53ET0 693 aaPredicted RBP9.82□□□□□ -0.84
CUX1-217ENST00000558836 ZMAT1Q5H9K5 638 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 MANEAQ5SRI9 462 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 AADACL4Q5VUY2 407 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 DESI1Q6ICB0 168 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 NPSR1Q6W5P4 371 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 LAPTM4BQ86VI4 370 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 BPIFA2Q96DR5 249 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 DNAJA3Q96EY1 480 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 CD180Q99467 661 aa9.82□□□□□ -0.84
CUX1-217ENST00000558836 STACQ99469 402 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms