RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 ERVFC1P60507 584 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 RPS15P62841 145 aaKnown RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 ETFDHQ16134 617 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 PLBD1Q6P4A8 553 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 GRASPQ7Z6J2 395 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 MRGPREQ86SM8 312 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 LUZP2Q86TE4 346 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 SERPINA12Q8IW75 414 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 TTLQ8NG68 377 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 OR52B4Q8NGK2 314 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 TEX47Q8TBZ9 253 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 PXYLP1Q8TE99 480 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 TMEM255BQ8WV15 326 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 SGTBQ96EQ0 304 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 TEFMQ96QE5 360 aaKnown RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 OR2M2Q96R28 347 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 DPH7Q9BTV6 452 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 LDHAL6BQ9BYZ2 381 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 SEMA4CQ9C0C4 833 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 C20orf85Q9H1P6 137 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 NTMQ9P121 344 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 KLK11Q9UBX7 282 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 PRKAG2Q9UGJ0 569 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 EXOSC1Q9Y3B2 195 aaKnown RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 NUBP2Q9Y5Y2 271 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 BACE2Q9Y5Z0 518 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 SNRNP200O75643 2136 aaKnown RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 CENPVL1A0A0U1RR11 272 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 PLSCR5A0PG75 271 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 SLC5A10A0PJK1 596 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 A8MXK9 166 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 CASC3O15234 703 aaKnown RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 SERPINI2O75830 405 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 RGS9O75916 674 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 TFP02787 698 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 GYPBP06028 91 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 UCHL1P09936 223 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 C1GALT1C1LP0DN25 315 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 NR2F1P10589 423 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 ANXA7P20073 488 aaKnown RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 PSMB5P28074 263 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 NOS3P29474 1203 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 RBMS1P29558 406 aaKnown RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 LCN1P31025 176 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 ADH7P40394 386 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 OR12D2P58182 307 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 RAB14P61106 215 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 KLF9Q13886 244 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 RPE65Q16518 533 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 CSRP2Q16527 193 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 GET4Q7L5D6 327 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 CEACAM19Q7Z692 300 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 SLC9B2Q86UD5 537 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 LRRC56Q8IYG6 542 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 SHISA5Q8N114 240 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 KLHL36Q8N4N3 616 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 BOLLQ8N9W6 283 aaKnown RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 OR5J2Q8NH18 312 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 FIBINQ8TAL6 211 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 HAVCR2Q8TDQ0 301 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 ZNF296Q8WUU4 475 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 ADAMTS14Q8WXS8 1223 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 OVCA2Q8WZ82 227 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 SMPDL3AQ92484 453 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 WNT2BQ93097 391 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 SLC25A28Q96A46 364 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 CXorf40BQ96DE9 158 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 DERL3Q96Q80 235 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 SLC38A2Q96QD8 506 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 FERD3LQ96RJ6 166 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 SAV1Q9H4B6 383 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 ISYNA1Q9NPH2 558 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 IFT46Q9NQC8 304 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 NANSQ9NR45 359 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 KLHL42Q9P2K6 505 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 TAC3Q9UHF0 121 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 SCP2D1Q9UJQ7 156 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 COPS3Q9UNS2 423 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 PCDHGA9Q9Y5G4 932 aaKnown RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 NPTNQ9Y639 398 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 TRIOO75962 3097 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 MDC1Q14676 2089 aaKnown RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 A0A1W2PRG6 482 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 DNASE2O00115 360 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 EFCAB14O75071 495 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 POP7O75817 140 aaKnown RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 NFATC1O95644 943 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 EGFP01133 1207 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 PCCBP05166 539 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 RB1P06400 928 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 C8orf89P0DMQ9 161 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 HOXB3P14651 431 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 PTBP1P26599 531 aaKnown RBP eCLIP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 ACSL1P33121 698 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 TM4SF4P48230 202 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 MTNR1BP49286 362 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 TPMTP51580 245 aa4.52□□□□□ -1.69
LIMA1-214ENST00000552783 PCBP4P57723 403 aaKnown RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 RPS7P62081 194 aaKnown RBP4.52□□□□□ -1.69
LIMA1-214ENST00000552783 SNTB2Q13425 540 aaKnown RBP4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms