RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 ZNF141Q15928 474 aa14.19□□□□□ -0.14
CCDC78-216ENST00000544996 PLPPR5Q32ZL2 321 aa14.19□□□□□ -0.14
CCDC78-216ENST00000544996 TIGD2Q4W5G0 525 aa14.19□□□□□ -0.14
CCDC78-216ENST00000544996 GPAT3Q53EU6 434 aa14.19□□□□□ -0.14
CCDC78-216ENST00000544996 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.19□□□□□ -0.14
CCDC78-216ENST00000544996 PDZK1Q5T2W1 519 aa14.19□□□□□ -0.14
CCDC78-216ENST00000544996 EEF1A1P5Q5VTE0 462 aa14.19□□□□□ -0.14
CCDC78-216ENST00000544996 C9orf106Q8NAJ2 232 aa14.19□□□□□ -0.14
CCDC78-216ENST00000544996 ACBD4Q8NC06 268 aa14.19□□□□□ -0.14
CCDC78-216ENST00000544996 OIT3Q8WWZ8 545 aa14.19□□□□□ -0.14
CCDC78-216ENST00000544996 SMPDL3BQ92485 455 aa14.19□□□□□ -0.14
CCDC78-216ENST00000544996 ROPN1LQ96C74 230 aa14.19□□□□□ -0.14
CCDC78-216ENST00000544996 EBF4Q9BQW3 602 aa14.19□□□□□ -0.14
CCDC78-216ENST00000544996 LIPT1Q9Y234 373 aa14.19□□□□□ -0.14
CCDC78-216ENST00000544996 WDR45Q9Y484 360 aa14.19□□□□□ -0.14
CCDC78-216ENST00000544996 SERINC4A6NH21 518 aa14.18□□□□□ -0.14
CCDC78-216ENST00000544996 SHISA8B8ZZ34 492 aa14.18□□□□□ -0.14
CCDC78-216ENST00000544996 HMGN4O00479 90 aa14.18□□□□□ -0.14
CCDC78-216ENST00000544996 ZNF264O43296 627 aa14.18□□□□□ -0.14
CCDC78-216ENST00000544996 EIF4E2O60573 245 aaKnown RBP14.18□□□□□ -0.14
CCDC78-216ENST00000544996 TNFRSF21O75509 655 aa14.18□□□□□ -0.14
CCDC78-216ENST00000544996 ZCCHC18P0CG32 403 aa14.18□□□□□ -0.14
CCDC78-216ENST00000544996 UBL4AP11441 157 aa14.18□□□□□ -0.14
CCDC78-216ENST00000544996 IGFBP2P18065 325 aa14.18□□□□□ -0.14
CCDC78-216ENST00000544996 PEX19P40855 299 aa14.18□□□□□ -0.14
CCDC78-216ENST00000544996 MAGEA8P43361 318 aa14.18□□□□□ -0.14
CCDC78-216ENST00000544996 MRPL19P49406 292 aaKnown RBP14.18□□□□□ -0.14
CCDC78-216ENST00000544996 ASCL1P50553 236 aa14.18□□□□□ -0.14
CCDC78-216ENST00000544996 RNF144AP50876 292 aaPredicted RBP14.18□□□□□ -0.14
CCDC78-216ENST00000544996 SUCLG1P53597 346 aaKnown RBP14.18□□□□□ -0.14
CCDC78-216ENST00000544996 CLDN20P56880 219 aa14.18□□□□□ -0.14
CCDC78-216ENST00000544996 IRX1P78414 480 aaPredicted RBP14.18□□□□□ -0.14
CCDC78-216ENST00000544996 SGCBQ16585 318 aa14.18□□□□□ -0.14
CCDC78-216ENST00000544996 C6orf10Q5SRN2 563 aa14.18□□□□□ -0.14
CCDC78-216ENST00000544996 OR2A2Q6IF42 318 aa14.18□□□□□ -0.14
CCDC78-216ENST00000544996 CBLN3Q6UW01 205 aa14.18□□□□□ -0.14
CCDC78-216ENST00000544996 DNAJC14Q6Y2X3 702 aaPredicted RBP14.18□□□□□ -0.14
CCDC78-216ENST00000544996 EIF3MQ7L2H7 374 aaKnown RBP14.18□□□□□ -0.14
CCDC78-216ENST00000544996 ZNF619Q8N2I2 560 aa14.18□□□□□ -0.14
CCDC78-216ENST00000544996 TMCO5AQ8N6Q1 288 aa14.18□□□□□ -0.14
CCDC78-216ENST00000544996 TOR1AIP2Q8NFQ8 470 aa14.18□□□□□ -0.14
CCDC78-216ENST00000544996 OR9I1Q8NGQ6 314 aa14.18□□□□□ -0.14
CCDC78-216ENST00000544996 VPS33AQ96AX1 596 aa14.18□□□□□ -0.14
CCDC78-216ENST00000544996 INTS12Q96CB8 462 aaKnown RBP14.18□□□□□ -0.14
CCDC78-216ENST00000544996 RNF145Q96MT1 663 aa14.18□□□□□ -0.14
CCDC78-216ENST00000544996 TRNT1Q96Q11 434 aaKnown RBP14.18□□□□□ -0.14
CCDC78-216ENST00000544996 TREX2Q9BQ50 279 aaPredicted RBP14.18□□□□□ -0.14
CCDC78-216ENST00000544996 SFXN3Q9BWM7 321 aa14.18□□□□□ -0.14
CCDC78-216ENST00000544996 PINK1Q9BXM7 581 aa14.18□□□□□ -0.14
CCDC78-216ENST00000544996 ICAM5Q9UMF0 924 aa14.18□□□□□ -0.14
CCDC78-216ENST00000544996 ZNF175Q9Y473 711 aa14.18□□□□□ -0.14
CCDC78-216ENST00000544996 EEF1E1-BLOC1S5C9J1V9 151 aa14.17□□□□□ -0.14
CCDC78-216ENST00000544996 H0YC42 278 aa14.17□□□□□ -0.14
CCDC78-216ENST00000544996 SYT5O00445 386 aa14.17□□□□□ -0.14
CCDC78-216ENST00000544996 EEF1E1O43324 174 aaKnown RBP14.17□□□□□ -0.14
CCDC78-216ENST00000544996 KIAA0513O60268 411 aa14.17□□□□□ -0.14
CCDC78-216ENST00000544996 UGT2B17O75795 530 aa14.17□□□□□ -0.14
CCDC78-216ENST00000544996 CSTAP01040 98 aa14.17□□□□□ -0.14
CCDC78-216ENST00000544996 LINGO3P0C6S8 592 aa14.17□□□□□ -0.14
CCDC78-216ENST00000544996 PRF1P14222 555 aa14.17□□□□□ -0.14
CCDC78-216ENST00000544996 ADH6P28332 368 aa14.17□□□□□ -0.14
CCDC78-216ENST00000544996 SSTR2P30874 369 aa14.17□□□□□ -0.14
CCDC78-216ENST00000544996 UQCRC1P31930 480 aa14.17□□□□□ -0.14
CCDC78-216ENST00000544996 CCR4P51679 360 aa14.17□□□□□ -0.14
CCDC78-216ENST00000544996 TPD52P55327 224 aaPredicted RBP14.17□□□□□ -0.14
CCDC78-216ENST00000544996 RAC1P63000 192 aa14.17□□□□□ -0.14
CCDC78-216ENST00000544996 CBFBQ13951 182 aa14.17□□□□□ -0.14
CCDC78-216ENST00000544996 HSP90B2PQ58FF3 399 aa14.17□□□□□ -0.14
CCDC78-216ENST00000544996 TYW3Q6IPR3 259 aaKnown RBP14.17□□□□□ -0.14
CCDC78-216ENST00000544996 DMRTC2Q8IXT2 367 aaPredicted RBP14.17□□□□□ -0.14
CCDC78-216ENST00000544996 RELL2Q8NC24 303 aaPredicted RBP14.17□□□□□ -0.14
CCDC78-216ENST00000544996 OR5W2Q8NH69 310 aa14.17□□□□□ -0.14
CCDC78-216ENST00000544996 RFWD2Q8NHY2 731 aa14.17□□□□□ -0.14
CCDC78-216ENST00000544996 PNPT1Q8TCS8 783 aaKnown RBP14.17□□□□□ -0.14
CCDC78-216ENST00000544996 TRIM8Q9BZR9 551 aa14.17□□□□□ -0.14
CCDC78-216ENST00000544996 SAP130Q9H0E3 1048 aa14.17□□□□□ -0.14
CCDC78-216ENST00000544996 TMEM45AQ9NWC5 275 aa14.17□□□□□ -0.14
CCDC78-216ENST00000544996 PAQR5Q9NXK6 330 aaPredicted RBP14.17□□□□□ -0.14
CCDC78-216ENST00000544996 FOXD3Q9UJU5 478 aaPredicted RBP14.17□□□□□ -0.14
CCDC78-216ENST00000544996 GPC6Q9Y625 555 aaPredicted RBP14.17□□□□□ -0.14
CCDC78-216ENST00000544996 FREM3P0C091 2139 aa14.17□□□□□ -0.14
CCDC78-216ENST00000544996 EIF1AYO14602 144 aaKnown RBP14.16□□□□□ -0.14
CCDC78-216ENST00000544996 OIP5O43482 229 aa14.16□□□□□ -0.14
CCDC78-216ENST00000544996 CYP7B1O75881 506 aa14.16□□□□□ -0.14
CCDC78-216ENST00000544996 H6PDO95479 791 aa14.16□□□□□ -0.14
CCDC78-216ENST00000544996 TGM6O95932 706 aa14.16□□□□□ -0.14
CCDC78-216ENST00000544996 CRHP06850 196 aa14.16□□□□□ -0.14
CCDC78-216ENST00000544996 NR2F1P10589 423 aa14.16□□□□□ -0.14
CCDC78-216ENST00000544996 PSMA4P25789 261 aaKnown RBP14.16□□□□□ -0.14
CCDC78-216ENST00000544996 ELK4P28324 431 aa14.16□□□□□ -0.14
CCDC78-216ENST00000544996 EIF1AXP47813 144 aaKnown RBP14.16□□□□□ -0.14
CCDC78-216ENST00000544996 AGFG1P52594 562 aaKnown RBP14.16□□□□□ -0.14
CCDC78-216ENST00000544996 CLDN15P56746 228 aa14.16□□□□□ -0.14
CCDC78-216ENST00000544996 FOXF2Q12947 444 aa14.16□□□□□ -0.14
CCDC78-216ENST00000544996 NDUFAF6Q330K2 333 aa14.16□□□□□ -0.14
CCDC78-216ENST00000544996 FBXL19-AS1Q494R0 122 aa14.16□□□□□ -0.14
CCDC78-216ENST00000544996 PDSS1Q5T2R2 415 aa14.16□□□□□ -0.14
CCDC78-216ENST00000544996 AP1ARQ63HQ0 302 aa14.16□□□□□ -0.14
CCDC78-216ENST00000544996 POMZP3Q6PJE2 187 aa14.16□□□□□ -0.14
CCDC78-216ENST00000544996 PLXDC2Q6UX71 529 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms