RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 NLRP9Q7RTR0 991 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 EFL1Q7Z2Z2 1120 aaKnown RBP2.33□□□□□ -2.04
CD44-234ENST00000531873 MOB3BQ86TA1 216 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 SERPINA9Q86WD7 417 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 C15orf54Q8N8G6 183 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 OR51G2Q8NGK0 314 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 TUBGCP3Q96CW5 907 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 FAHD2AQ96GK7 314 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 TMEM80Q96HE8 168 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 C7orf34Q96L11 122 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 MTMR9Q96QG7 549 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 MCCC1Q96RQ3 725 aaPredicted RBP2.33□□□□□ -2.04
CD44-234ENST00000531873 VGLL1Q99990 258 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 RBM4BQ9BQ04 359 aaKnown RBP2.33□□□□□ -2.04
CD44-234ENST00000531873 TCHPQ9BT92 498 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 OPN3Q9H1Y3 402 aaPredicted RBP2.33□□□□□ -2.04
CD44-234ENST00000531873 LRRN3Q9H3W5 708 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 FN3KRPQ9HA64 309 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 FANCFQ9NPI8 374 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 SLC17A5Q9NRA2 495 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 HYPKQ9NX55 129 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 IL36GQ9NZH8 169 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 DHRS4-AS1Q9P1J3 65 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 WRAP73Q9P2S5 460 aaPredicted RBP2.33□□□□□ -2.04
CD44-234ENST00000531873 ONECUT1Q9UBC0 465 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 RPH3ALQ9UNE2 315 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 SCML2Q9UQR0 700 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 L3MBTL1Q9Y468 752 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 OARD1Q9Y530 152 aa2.33□□□□□ -2.04
CD44-234ENST00000531873 PHF3Q92576 2039 aaKnown RBP2.32□□□□□ -2.04
CD44-234ENST00000531873 TRAV9-2A0A087WT02 112 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 A0A0J9YWU9 116 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 HSFX4A0A1B0GTS1 333 aaPredicted RBP2.32□□□□□ -2.04
CD44-234ENST00000531873 HSFX3A0A1B0GWH4 333 aaPredicted RBP2.32□□□□□ -2.04
CD44-234ENST00000531873 FRG2CA6NGY1 282 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 CCT8L1PA6NM43 557 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 PP2D1A8MPX8 630 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 FAM220BPB1ANY3 271 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 NPIPA7E9PJI5 369 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 G3V3Y1 287 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 H3BMQ9 156 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 CDX4O14627 284 aaPredicted RBP2.32□□□□□ -2.04
CD44-234ENST00000531873 PHF1O43189 567 aaPredicted RBP2.32□□□□□ -2.04
CD44-234ENST00000531873 LCMT2O60294 686 aaKnown RBP2.32□□□□□ -2.04
CD44-234ENST00000531873 FCMRO60667 390 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 ECI2O75521 394 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 KBTBD11O94819 623 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 SLC2A10O95528 541 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 SERPINA3P01011 423 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 PIGRP01833 764 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 CD55P08174 381 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 NPIPA8P0DM63 369 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 PNMTP11086 282 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 LAMP1P11279 417 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 NCK1P16333 377 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 CYP2B6P20813 491 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 CDH5P33151 784 aaPredicted RBP2.32□□□□□ -2.04
CD44-234ENST00000531873 CCT3P49368 545 aaKnown RBP2.32□□□□□ -2.04
CD44-234ENST00000531873 KRTAP10-5P60370 271 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 VLDLRP98155 873 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 BEX3Q00994 111 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 PUDPQ08623 228 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 FGL1Q08830 312 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 NDUFA9Q16795 377 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 PPP1R3AQ16821 1122 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 CNPY1Q3B7I2 92 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 KRTAP27-1Q3LI81 207 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 SLC25A52Q3SY17 297 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 FILIP1LQ4L180 1135 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 TP53I3Q53FA7 332 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 GFI1BQ5VTD9 330 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 OR8G2PQ6IF36 304 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 FAM199XQ6PEV8 388 aaPredicted RBP2.32□□□□□ -2.04
CD44-234ENST00000531873 CCDC80Q76M96 950 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 APTXQ7Z2E3 356 aaKnown RBP2.32□□□□□ -2.04
CD44-234ENST00000531873 C16orf62Q7Z3J2 963 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 ZNF440Q8IYI8 595 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 FGFRL1Q8N441 504 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 CATSPER1Q8NEC5 780 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 OR10A7Q8NGE5 316 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 FBXO32Q969P5 355 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 CITED1Q99966 193 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 CRNKL1Q9BZJ0 848 aaKnown RBP2.32□□□□□ -2.04
CD44-234ENST00000531873 GFRA4Q9GZZ7 299 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 NXF5Q9H1B4 397 aaKnown RBP2.32□□□□□ -2.04
CD44-234ENST00000531873 METTL7AQ9H8H3 244 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 PANK3Q9H999 370 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 TM9SF3Q9HD45 589 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 TIGARQ9NQ88 270 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 NMRK1Q9NWW6 199 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 LCMT1Q9UIC8 334 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 KLK13Q9UKR3 277 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 CDH9Q9ULB4 789 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 NPIPA1Q9UND3 350 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 TIMM10BQ9Y5J6 103 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 ALG6Q9Y672 507 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 MAD1L1Q9Y6D9 718 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 CHD4Q14839 1912 aa2.32□□□□□ -2.04
CD44-234ENST00000531873 RAI1Q7Z5J4 1906 aaPredicted RBP2.32□□□□□ -2.04
CD44-234ENST00000531873 USP6P35125 1406 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms