RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 ZNF217O75362 1048 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 DBIP07108 87 aaKnown RBP12.35□□□□□ -0.43
TCOF1-213ENST00000514442 SLC6A6P31641 620 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 CLDN20P56880 219 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 TAP2Q03519 686 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 CRYZQ08257 329 aaKnown RBP12.35□□□□□ -0.43
TCOF1-213ENST00000514442 SLC14A2Q15849 920 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 KIAA1958Q8N8K9 716 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 BEST4Q8NFU0 473 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 OR2L2Q8NH16 312 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 OR56A3Q8NH54 315 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 LGR4Q9BXB1 951 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 SRRQ9GZT4 340 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 CWH43Q9H720 699 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 CXXC1Q9P0U4 656 aaPredicted RBP12.35□□□□□ -0.43
TCOF1-213ENST00000514442 C2orf92A0A1B0GVN3 265 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 PLGP00747 810 aaPredicted RBP12.35□□□□□ -0.43
TCOF1-213ENST00000514442 CSF3P09919 207 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 PPP3CBP16298 524 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 BAMBIQ13145 260 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 RGNQ15493 299 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 DLEU7Q6UYE1 221 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 LRRC28Q86X40 367 aaPredicted RBP12.35□□□□□ -0.43
TCOF1-213ENST00000514442 MAFIPQ8WZ33 124 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 OSTF1Q92882 214 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 CNTNAP3BQ96NU0 1288 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 ZFYVE21Q9BQ24 234 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 THSD7AQ9UPZ6 1657 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 TUBAL3A6NHL2 446 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 SSX4O60224 188 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 ZP3P21754 424 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 PTBP1P26599 531 aaKnown RBP eCLIP12.35□□□□□ -0.43
TCOF1-213ENST00000514442 RBMS1P29558 406 aaKnown RBP12.35□□□□□ -0.43
TCOF1-213ENST00000514442 ZNF41P51814 821 aaPredicted RBP12.35□□□□□ -0.43
TCOF1-213ENST00000514442 HK3P52790 923 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 S100A12P80511 92 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 PLCXD2Q0VAA5 305 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 TCTE1Q5JU00 501 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 CLLU1Q5K131 121 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 SLC27A4Q6P1M0 643 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 CHRDL2Q6WN34 429 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 RDH10Q8IZV5 341 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 OR52N2Q8NGI0 321 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 ASB11Q8WXH4 323 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 PKMYT1Q99640 499 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 PLCXD1Q9NUJ7 323 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 SCML1Q9UN30 329 aa12.35□□□□□ -0.43
TCOF1-213ENST00000514442 SSC5DA1L4H1 1573 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 RNF13O43567 381 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 MAP3K8P41279 467 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 GPR4P46093 362 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 PRLHRP49683 370 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 CAV3P56539 151 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 FAM69AQ5T7M9 428 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 PGAP1Q75T13 922 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 SLC25A46Q96AG3 418 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 LRRC46Q96FV0 321 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 TUBB1Q9H4B7 451 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 IGLV3-10A0A075B6K4 115 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 TRAPPC13A5PLN9 417 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 F5H5P2 479 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 PEX12O00623 359 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 CACNG3O60359 315 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 FARS2O95363 451 aaKnown RBP12.34□□□□□ -0.43
TCOF1-213ENST00000514442 C1orf105O95561 183 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 MTNR1AP48039 350 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 ATXN7L3Q14CW9 347 aaPredicted RBP12.34□□□□□ -0.43
TCOF1-213ENST00000514442 SEC23BQ15437 767 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.34□□□□□ -0.434e-6■■■□□ 17.6
TCOF1-213ENST00000514442 WDSUB1Q8N9V3 476 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 ASF1BQ9NVP2 202 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 LIPT1Q9Y234 373 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 ZNF175Q9Y473 711 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 AP1M2Q9Y6Q5 423 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 ENPP4Q9Y6X5 453 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 NAP1L6A6NFF2 107 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 CSO75390 466 aaKnown RBP12.34□□□□□ -0.43
TCOF1-213ENST00000514442 SNAPINO95295 136 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 TACSTD2P09758 323 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 PVRP15151 417 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 LCTLQ6UWM7 567 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 GSG1LQ6UXU4 331 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 OR9A2Q8NGT5 310 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 RADILQ96JH8 1075 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 POLDIP3Q9BY77 421 aaKnown RBP12.34□□□□□ -0.43
TCOF1-213ENST00000514442 DNTTIP1Q9H147 329 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 PLAC1Q9HBJ0 212 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 C14orf105Q9NVL8 296 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 KIF25Q9UIL4 384 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 NOP16Q9Y3C1 178 aaKnown RBP12.34□□□□□ -0.43
TCOF1-213ENST00000514442 LAMB2P55268 1798 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 ADAMTSL1Q8N6G6 1762 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 GOSR2O14653 212 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 GPR37L1O60883 481 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 GPX5O75715 221 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 CTGFP29279 349 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 HOXC12P31275 282 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 RAP2BP61225 183 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 NKX3-2P78367 333 aa12.34□□□□□ -0.43
TCOF1-213ENST00000514442 DEFA6Q01524 100 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms