RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 FAM46CQ5VWP2 391 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 METTL21CQ5VZV1 264 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 LIPJQ5W064 366 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 HIST2H2BCQ6DN03 193 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 HIST2H2BDQ6DRA6 164 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 OR52W1Q6IF63 320 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 AADACL2Q6P093 401 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 RHBDF2Q6PJF5 856 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 LCTLQ6UWM7 567 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 GDPD4Q6W3E5 623 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 RFPL4BQ6ZWI9 263 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 CENPUQ71F23 418 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 SMIM15Q7Z3B0 74 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 KLBQ86Z14 1044 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 ZC3H3Q8IXZ2 948 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 CMTM8Q8IZV2 173 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 HORMAD2Q8N7B1 307 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 OR52N1Q8NH53 320 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 HCAR2Q8TDS4 363 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 SETD7Q8WTS6 366 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 FAR1Q8WVX9 515 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 DNAJB3Q8WWF6 145 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 ACOT11Q8WXI4 607 aaPredicted RBP4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 NAT6Q93015 286 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 PIGTQ969N2 578 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 FAM131CQ96AQ9 280 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 MTERF3Q96E29 417 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 STAMBPL1Q96FJ0 436 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 DNAJC1Q96KC8 554 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 HARBI1Q96MB7 349 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 TGM7Q96PF1 710 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 OR5B2Q96R09 309 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 SYT11Q9BT88 431 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 PANK2Q9BZ23 570 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 SLITRK2Q9H156 845 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 TBC1D17Q9HA65 648 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 ACOXLQ9NUZ1 547 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 INTS9Q9NV88 658 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 ARMC1Q9NVT9 282 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 LYARQ9NX58 379 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 USE1Q9NZ43 259 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 EIF3KQ9UBQ5 218 aaKnown RBP4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 PLEKHB1Q9UF11 243 aaPredicted RBP4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 BCAP29Q9UHQ4 241 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 CLEC4EQ9ULY5 219 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 TMCO1Q9UM00 188 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 SLC22A13Q9Y226 551 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 WIF1Q9Y5W5 379 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 AUP1Q9Y679 476 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 CEPT1Q9Y6K0 416 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 UMODL1Q5DID0 1318 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 ZBED9Q6R2W3 1325 aa4.35□□□□□ -1.71
CCDC88A-210ENST00000468534 A0A1W2PQL4 384 aaPredicted RBP4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 TMEM8BA6NDV4 472 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 ZNF840PA6NDX5 716 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 FRG2CA6NGY1 282 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 SRRM3A6NNA2 597 aaPredicted RBP4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 CLDN5O00501 218 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 RFXANKO14593 260 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 SLC9A3R1O14745 358 aaPredicted RBP4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 LINC01565O15544 149 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 LDB2O43679 373 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 MAGEC1O60732 1142 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 NXPH2O95156 264 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 DCNP07585 359 aaKnown RBP4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 UBCP0CG48 685 aaKnown RBP4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 GOT1P17174 413 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 HOXB9P17482 250 aaPredicted RBP4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 PSMB5P28074 263 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 NMBRP28336 390 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 HOXD3P31249 432 aaPredicted RBP4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 STX2P32856 288 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 PCK1P35558 622 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 HSD17B3P37058 310 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 TGFBR2P37173 567 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 RGRP47804 291 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 UQCRFS1P47985 274 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 TNFSF10P50591 281 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 RASSF2P50749 326 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 P2RY4P51582 365 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 RIDAP52758 137 aaKnown RBP4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 TMPRSS3P57727 454 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 PLP1P60201 277 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 LCN2P80188 198 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 CDK3Q00526 305 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 NAAAQ02083 359 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 C2orf54Q08AI8 447 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 SREBF2Q12772 1141 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 DYNC1I2Q13409 638 aaKnown RBP4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 PON3Q15166 354 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 SYPL1Q16563 259 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 STX1AQ16623 288 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 SLC22A10Q63ZE4 541 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 SLC8B1Q6J4K2 584 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 CAPN13Q6MZZ7 669 aaPredicted RBP4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 LRRC8EQ6NSJ5 796 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 ARMCX5Q6P1M9 558 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 FUT10Q6P4F1 479 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 ULK3Q6PHR2 472 aa4.34□□□□□ -1.71
CCDC88A-210ENST00000468534 MDGA2Q7Z553 956 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms