RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 PQLC1Q8N2U9 271 aa13.03□□□□□ -0.32
SF3B1-204ENST00000414963 FDCSPQ8NFU4 85 aa13.03□□□□□ -0.32
SF3B1-204ENST00000414963 NR4A3Q92570 626 aa13.03□□□□□ -0.32
SF3B1-204ENST00000414963 DCBLD2Q96PD2 775 aa13.03□□□□□ -0.32
SF3B1-204ENST00000414963 SMAD5Q99717 465 aaKnown RBP13.03□□□□□ -0.32
SF3B1-204ENST00000414963 METTL7AQ9H8H3 244 aa13.03□□□□□ -0.32
SF3B1-204ENST00000414963 PROK2Q9HC23 129 aa13.03□□□□□ -0.32
SF3B1-204ENST00000414963 AGPAT4Q9NRZ5 378 aa13.03□□□□□ -0.32
SF3B1-204ENST00000414963 C6orf203Q9P0P8 240 aaPredicted RBP13.03□□□□□ -0.32
SF3B1-204ENST00000414963 DNAJB9Q9UBS3 223 aa13.03□□□□□ -0.32
SF3B1-204ENST00000414963 ACAD8Q9UKU7 415 aa13.03□□□□□ -0.32
SF3B1-204ENST00000414963 PCDHGA9Q9Y5G4 932 aaKnown RBP13.03□□□□□ -0.32
SF3B1-204ENST00000414963 DOCK10Q96BY6 2186 aa13.03□□□□□ -0.32
SF3B1-204ENST00000414963 URB1O60287 2271 aaKnown RBP13.02□□□□□ -0.32
SF3B1-204ENST00000414963 IGF2RP11717 2491 aa13.02□□□□□ -0.32
SF3B1-204ENST00000414963 hCG_2039718K7EN88 272 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 CLOCKO15516 846 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 OIP5O43482 229 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 SEMA7AO75326 666 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 DEAF1O75398 565 aaPredicted RBP13.02□□□□□ -0.33
SF3B1-204ENST00000414963 ATP6V1G2O95670 118 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 UBTFL6P0CB48 400 aaPredicted RBP13.02□□□□□ -0.33
SF3B1-204ENST00000414963 CCL3P10147 92 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 PRG2P13727 222 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 MSX1P28360 303 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 SLC6A8P48029 635 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 OR2T5Q6IEZ7 315 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 LINC00696Q6ZRV3 163 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 MDGA2Q7Z553 956 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 ZNF605Q86T29 641 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 RANBP3LQ86VV4 465 aaPredicted RBP13.02□□□□□ -0.33
SF3B1-204ENST00000414963 LILRA2Q8N149 483 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 LSMEM1Q8N8F7 131 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 KDF1Q8NAX2 398 aaPredicted RBP13.02□□□□□ -0.33
SF3B1-204ENST00000414963 OR2T29Q8NH02 315 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 VANGL1Q8TAA9 524 aaPredicted RBP13.02□□□□□ -0.33
SF3B1-204ENST00000414963 DUSP19Q8WTR2 217 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 LRTOMTQ8WZ04 291 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 ARSGQ96EG1 525 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 CENPNQ96H22 339 aaPredicted RBP13.02□□□□□ -0.33
SF3B1-204ENST00000414963 DHRS1Q96LJ7 313 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 PIP5K1AQ99755 562 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 PKP2Q99959 881 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 ZNF559Q9BR84 538 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 OSBPL11Q9BXB4 747 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 RASSF4Q9H2L5 321 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 TIMMDC1Q9NPL8 285 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 SACM1LQ9NTJ5 587 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 LRFN1Q9P244 771 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 TESQ9UGI8 421 aaKnown RBP13.02□□□□□ -0.33
SF3B1-204ENST00000414963 ICAM5Q9UMF0 924 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 CARD8Q9Y2G2 431 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 FAM32AQ9Y421 112 aaKnown RBP13.02□□□□□ -0.33
SF3B1-204ENST00000414963 WIF1Q9Y5W5 379 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 MED13Q9UHV7 2174 aa13.02□□□□□ -0.33
SF3B1-204ENST00000414963 FRYQ5TBA9 3013 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 OR5H15A6NDH6 313 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 H0Y3Z8 333 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 AP3D1O14617 1153 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 FFAR1O14842 300 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 FRS3O43559 492 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 HCRTR2O43614 444 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 SCO2O43819 266 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 ADAM11O75078 769 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 CST1P01037 141 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 LDLRP01130 860 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 MT-ND1P03886 318 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 THRBP10828 461 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 ITPKBP27987 946 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 RNF144AP50876 292 aaPredicted RBP13.01□□□□□ -0.33
SF3B1-204ENST00000414963 P2RX1P51575 399 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 HMGA2P52926 109 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 SUMO3P55854 103 aaPredicted RBP13.01□□□□□ -0.33
SF3B1-204ENST00000414963 OC90Q02509 493 aaPredicted RBP13.01□□□□□ -0.33
SF3B1-204ENST00000414963 ZNF117Q03924 483 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 EPS8Q12929 822 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 GK3PQ14409 553 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 NDUFAF6Q330K2 333 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 BICRALQ6AI39 1079 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 CBLN3Q6UW01 205 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 IGFL3Q6UXB1 125 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 CYP4Z1Q86W10 505 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 GATSQ8NAP1 163 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 PSD4Q8NDX1 1056 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 MDS2Q8NDY4 140 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 OR5W2Q8NH69 310 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 MCHR1Q99705 422 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 TRIM2Q9C040 744 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 NTN4Q9HB63 628 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 GALNT9Q9HCQ5 603 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 ANKRD10Q9NXR5 420 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 KLRF1Q9NZS2 232 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 NKX1-2Q9UD57 310 aaPredicted RBP13.01□□□□□ -0.33
SF3B1-204ENST00000414963 RIMS3Q9UJD0 308 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 A4GNTQ9UNA3 340 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 EXPH5Q8NEV8 1989 aa13.01□□□□□ -0.33
SF3B1-204ENST00000414963 TRIM3O75382 744 aaPredicted RBP13□□□□□ -0.33
SF3B1-204ENST00000414963 OR5F1O95221 314 aa13□□□□□ -0.33
SF3B1-204ENST00000414963 BAG2O95816 211 aa13□□□□□ -0.33
SF3B1-204ENST00000414963 P04436 131 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms