RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 DUSP7Q16829 419 aa12.38□□□□□ -0.43
LIMS1-204ENST00000409441 RPS26P11Q5JNZ5 115 aaPredicted RBP12.38□□□□□ -0.43
LIMS1-204ENST00000409441 COLEC12Q5KU26 742 aa12.38□□□□□ -0.43
LIMS1-204ENST00000409441 HSDL2Q6YN16 418 aa12.38□□□□□ -0.43
LIMS1-204ENST00000409441 SZRD1Q7Z422 152 aa12.38□□□□□ -0.43
LIMS1-204ENST00000409441 CLEC1AQ8NC01 280 aa12.38□□□□□ -0.43
LIMS1-204ENST00000409441 NUP43Q8NFH3 380 aa12.38□□□□□ -0.43
LIMS1-204ENST00000409441 PHF10Q8WUB8 498 aaKnown RBP12.38□□□□□ -0.43
LIMS1-204ENST00000409441 SGCDQ92629 289 aa12.38□□□□□ -0.43
LIMS1-204ENST00000409441 RAB8BQ92930 207 aa12.38□□□□□ -0.43
LIMS1-204ENST00000409441 DHRS1Q96LJ7 313 aa12.38□□□□□ -0.43
LIMS1-204ENST00000409441 OR51I1Q9H343 314 aa12.38□□□□□ -0.43
LIMS1-204ENST00000409441 SERHL2Q9H4I8 314 aa12.38□□□□□ -0.43
LIMS1-204ENST00000409441 LIN28AQ9H9Z2 209 aaKnown RBP12.38□□□□□ -0.43
LIMS1-204ENST00000409441 ZNF223Q9UK11 482 aaPredicted RBP12.38□□□□□ -0.43
LIMS1-204ENST00000409441 CELSR3Q9NYQ7 3312 aa12.38□□□□□ -0.43
LIMS1-204ENST00000409441 PCSK5Q92824 1860 aa12.38□□□□□ -0.43
LIMS1-204ENST00000409441 TRBV11-1A0A0K0K1C0 115 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 PTGES3LE9PB15 166 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 RGS10O43665 173 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 XPNPEP2O43895 674 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 ZFAND5O76080 213 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 ATE1O95260 518 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 OR12D1P0DN82 309 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 CCNA2P20248 432 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 EMDP50402 254 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 CHAF1BQ13112 559 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 NPTX1Q15818 432 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 PRSS48Q7RTY5 328 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 CCDC71Q8IV32 467 aaPredicted RBP12.37□□□□□ -0.43
LIMS1-204ENST00000409441 ENTHD1Q8IYW4 607 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 TAGAPQ8N103 731 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 GPR32P1Q8NGA4 272 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 C16orf52Q8NHV5 167 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 FAR1Q8WVX9 515 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 THOC3Q96J01 351 aaKnown RBP12.37□□□□□ -0.43
LIMS1-204ENST00000409441 BTBD2Q9BX70 525 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 DEFB126Q9BYW3 111 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 CCDC90BQ9GZT6 254 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 J3KTA2 159 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 ASNA1O43681 348 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 PRAMEF2O60811 474 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 COQ9O75208 318 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 WBP4O75554 376 aaKnown RBP12.37□□□□□ -0.43
LIMS1-204ENST00000409441 NR2F1P10589 423 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 CALRP27797 417 aaKnown RBP12.37□□□□□ -0.43
LIMS1-204ENST00000409441 EPHA2P29317 976 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 CRISP3P54108 245 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 RNF4P78317 190 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 EMX1Q04741 257 aaPredicted RBP12.37□□□□□ -0.43
LIMS1-204ENST00000409441 ANKRD13BQ86YJ7 626 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 SLC44A2Q8IWA5 706 aaPredicted RBP12.37□□□□□ -0.43
LIMS1-204ENST00000409441 ZNF540Q8NDQ6 660 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 OR52J3Q8NH60 311 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 RORBQ92753 470 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 C16orf58Q96GQ5 468 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 ALPK1Q96QP1 1244 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 SIGLEC11Q96RL6 698 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 TREX2Q9BQ50 279 aaPredicted RBP12.37□□□□□ -0.43
LIMS1-204ENST00000409441 ERVK-18Q9QC07 812 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 SEC14L3Q9UDX4 400 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 PRODH2Q9UF12 536 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 ACAD8Q9UKU7 415 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 ZMIZ1Q9ULJ6 1067 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 TMCC3Q9ULS5 477 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 RNF6Q9Y252 685 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 CFL2Q9Y281 166 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 PCDHGA10Q9Y5H3 936 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 KCNMB2Q9Y691 235 aa12.37□□□□□ -0.43
LIMS1-204ENST00000409441 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 A0A0G2JPF8 293 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 C2orf92A0A1B0GVN3 265 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 A6NL46 340 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 OR6C76A6NM76 312 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 HNRNPCL2B2RXH8 293 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 HNRNPCL3B7ZW38 293 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 FAAHO00519 579 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 PRKNO60260 465 aaPredicted RBP12.36□□□□□ -0.43
LIMS1-204ENST00000409441 ADAP00813 363 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 HMGN2P05204 90 aaKnown RBP12.36□□□□□ -0.43
LIMS1-204ENST00000409441 HNRNPCL4P0DMR1 293 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 ITGA3P26006 1051 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 KRT20P35900 424 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 CCL11P51671 97 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 SOX8P57073 446 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 CXADRP78310 365 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 PIGFQ07326 219 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 NFATC3Q12968 1075 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 SYPL1Q16563 259 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 JMJD6Q6NYC1 403 aaPredicted RBP12.36□□□□□ -0.43
LIMS1-204ENST00000409441 SLC29A4Q7RTT9 530 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 P3H2Q8IVL5 708 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 C9orf40Q8IXQ3 194 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 GALNT16Q8N428 558 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 OR5L2Q8NGL0 311 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 OR8K3Q8NH51 312 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 RHOXF1Q8NHV9 184 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 THAP3Q8WTV1 239 aaPredicted RBP12.36□□□□□ -0.43
LIMS1-204ENST00000409441 APH1BQ8WW43 257 aa12.36□□□□□ -0.43
LIMS1-204ENST00000409441 XAGE5Q8WWM1 108 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms