RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 HOXB6P17509 224 aaKnown RBP16.51■□□□□ 0.23
SDC1-203ENST00000403076 RYKP34925 604 aa16.51■□□□□ 0.23
SDC1-203ENST00000403076 PTGDSP41222 190 aa16.51■□□□□ 0.23
SDC1-203ENST00000403076 ZNF117Q03924 483 aa16.51■□□□□ 0.23
SDC1-203ENST00000403076 OR5M10Q6IEU7 315 aa16.51■□□□□ 0.23
SDC1-203ENST00000403076 SLC25A25Q6KCM7 469 aa16.51■□□□□ 0.23
SDC1-203ENST00000403076 ZFP1Q6P2D0 407 aa16.51■□□□□ 0.23
SDC1-203ENST00000403076 IGFL2Q6UWQ7 119 aa16.51■□□□□ 0.23
SDC1-203ENST00000403076 ZNF550Q7Z398 422 aa16.51■□□□□ 0.23
SDC1-203ENST00000403076 GRAMD2AQ8IUY3 354 aa16.51■□□□□ 0.23
SDC1-203ENST00000403076 ZDHHC21Q8IVQ6 265 aa16.51■□□□□ 0.23
SDC1-203ENST00000403076 ZADH2Q8N4Q0 377 aa16.51■□□□□ 0.23
SDC1-203ENST00000403076 RNF138Q8WVD3 245 aa16.51■□□□□ 0.23
SDC1-203ENST00000403076 JSRP1Q96MG2 331 aaPredicted RBP16.51■□□□□ 0.23
SDC1-203ENST00000403076 ARHGAP9Q9BRR9 750 aa16.51■□□□□ 0.23
SDC1-203ENST00000403076 CHID1Q9BWS9 393 aa16.51■□□□□ 0.23
SDC1-203ENST00000403076 LAT2Q9GZY6 243 aa16.51■□□□□ 0.23
SDC1-203ENST00000403076 EVA1AQ9H8M9 152 aa16.51■□□□□ 0.23
SDC1-203ENST00000403076 FAM32AQ9Y421 112 aaKnown RBP16.51■□□□□ 0.23
SDC1-203ENST00000403076 NINQ8N4C6 2090 aa16.51■□□□□ 0.23
SDC1-203ENST00000403076 ANKRD11Q6UB99 2663 aaPredicted RBP16.51■□□□□ 0.23
SDC1-203ENST00000403076 ANKRD33BA6NCL7 494 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 C17orf51A8MQB3 221 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 AP3D1O14617 1153 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 GNB5O14775 395 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 OIP5O43482 229 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 FKBP6O75344 327 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 SNX4O95219 450 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 NUDT14O95848 222 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 MT-ND1P03886 318 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 ITGA2P17301 1181 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 CNR1P21554 472 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 GAS1P54826 345 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 HOXC5Q00444 222 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 RANBP3LQ86VV4 465 aaPredicted RBP16.5■□□□□ 0.23
SDC1-203ENST00000403076 RBM45Q8IUH3 476 aaKnown RBP16.5■□□□□ 0.23
SDC1-203ENST00000403076 LACC1Q8IV20 430 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 CATSPER1Q8NEC5 780 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 OR6T1Q8NGN1 323 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 B4GALNT2Q8NHY0 566 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 SLCO4A1Q96BD0 722 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 WFDC6Q9BQY6 131 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 IL1RAPQ9NPH3 570 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 ZMIZ1Q9ULJ6 1067 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 ASPMQ8IZT6 3477 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 SP1P08047 785 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 LINGO3P0C6S8 592 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 PRG2P13727 222 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 YAP1P46937 504 aaKnown RBP16.5■□□□□ 0.23
SDC1-203ENST00000403076 DNASE1L1P49184 302 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 GPR85P60893 370 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 SKP2Q13309 424 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 ZNF766Q5HY98 468 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 CBLN3Q6UW01 205 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 MDS2Q8NDY4 140 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 FAM71CQ8NEG0 241 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 OR4K17Q8NGC6 315 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 OR4D11Q8NGI4 311 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 SLC35B4Q969S0 331 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 DUS3LQ96G46 650 aaKnown RBP16.5■□□□□ 0.23
SDC1-203ENST00000403076 MCHR1Q99705 422 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 AMBRA1Q9C0C7 1298 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 DSN1Q9H410 356 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 S100A14Q9HCY8 104 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 EXOSC3Q9NQT5 275 aaKnown RBP16.5■□□□□ 0.23
SDC1-203ENST00000403076 MED11Q9P086 117 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 KLF13Q9Y2Y9 288 aaPredicted RBP16.5■□□□□ 0.23
SDC1-203ENST00000403076 FRYQ5TBA9 3013 aa16.5■□□□□ 0.23
SDC1-203ENST00000403076 KRT36O76013 467 aa16.49■□□□□ 0.23
SDC1-203ENST00000403076 SEMG1P04279 462 aa16.49■□□□□ 0.23
SDC1-203ENST00000403076 UQCRBP14927 111 aa16.49■□□□□ 0.23
SDC1-203ENST00000403076 MSX1P28360 303 aa16.49■□□□□ 0.23
SDC1-203ENST00000403076 TNFSF10P50591 281 aa16.49■□□□□ 0.23
SDC1-203ENST00000403076 P2RX1P51575 399 aa16.49■□□□□ 0.23
SDC1-203ENST00000403076 COPZ1P61923 177 aa16.49■□□□□ 0.23
SDC1-203ENST00000403076 VLDLRP98155 873 aa16.49■□□□□ 0.23
SDC1-203ENST00000403076 PLAURQ03405 335 aa16.49■□□□□ 0.23
SDC1-203ENST00000403076 COL28A1Q2UY09 1125 aa16.49■□□□□ 0.23
SDC1-203ENST00000403076 AAGABQ6PD74 315 aa16.49■□□□□ 0.23
SDC1-203ENST00000403076 CYP4Z1Q86W10 505 aa16.49■□□□□ 0.23
SDC1-203ENST00000403076 TMEM178AQ8NBL3 297 aa16.49■□□□□ 0.23
SDC1-203ENST00000403076 TOR1AIP2Q8NFQ8 470 aa16.49■□□□□ 0.23
SDC1-203ENST00000403076 OR1J4Q8NGS1 313 aa16.49■□□□□ 0.23
SDC1-203ENST00000403076 ARSGQ96EG1 525 aa16.49■□□□□ 0.23
SDC1-203ENST00000403076 ABHD17AQ96GS6 310 aa16.49■□□□□ 0.23
SDC1-203ENST00000403076 CRELD1Q96HD1 420 aa16.49■□□□□ 0.23
SDC1-203ENST00000403076 C7orf34Q96L11 122 aa16.49■□□□□ 0.23
SDC1-203ENST00000403076 FAM173AQ9BQD7 235 aa16.49■□□□□ 0.23
SDC1-203ENST00000403076 PRR14Q9BWN1 585 aa16.49■□□□□ 0.23
SDC1-203ENST00000403076 HES7Q9BYE0 225 aa16.49■□□□□ 0.23
SDC1-203ENST00000403076 PROK2Q9HC23 129 aa16.49■□□□□ 0.23
SDC1-203ENST00000403076 PCDHGB7Q9Y5F8 929 aa16.49■□□□□ 0.23
SDC1-203ENST00000403076 ENPP4Q9Y6X5 453 aa16.49■□□□□ 0.23
SDC1-203ENST00000403076 H0Y3Z8 333 aa16.48■□□□□ 0.23
SDC1-203ENST00000403076 KLRC4-KLRK1H3BQV0 150 aa16.48■□□□□ 0.23
SDC1-203ENST00000403076 HNRNPRO43390 633 aaKnown RBP16.48■□□□□ 0.23
SDC1-203ENST00000403076 PEX1O43933 1283 aa16.48■□□□□ 0.23
SDC1-203ENST00000403076 TIPRLO75663 272 aa16.48■□□□□ 0.23
SDC1-203ENST00000403076 DIRAS1O95057 198 aa16.48■□□□□ 0.23
SDC1-203ENST00000403076 PGCP20142 388 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms