RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 MFSD6LQ8IWD5 586 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 ADAM19Q9H013 955 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 ABRACLQ9P1F3 81 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 LALBAP00709 142 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 SERPINE2P07093 398 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 PRRT3Q5FWE3 981 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 OR2G6Q5TZ20 316 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 OR6V1Q8N148 313 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 OR4F15Q8NGB8 312 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 RBMXL1Q96E39 390 aaKnown RBP11.18□□□□□ -0.62
SYNPO-202ENST00000394243 C10orf71Q711Q0 1435 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 SLC22A23A1A5C7 686 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 CLEC3AO75596 197 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 KCNE1P15382 129 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 TAGLN2P37802 199 aaKnown RBP11.18□□□□□ -0.62
SYNPO-202ENST00000394243 CST9LP1Q5W188 147 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 OR4C11Q6IEV9 310 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 PRR18Q8N4B5 295 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 SDR9C7Q8NEX9 313 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 ABHD5Q8WTS1 349 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 C20orf24Q9BUV8 137 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 SIX4Q9UIU6 781 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 TMEM82A0PJX8 343 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 WASH4PA8MWX3 477 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 KCNJ5P48544 419 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 COL9A2Q14055 689 aaPredicted RBP11.18□□□□□ -0.62
SYNPO-202ENST00000394243 LRRC26Q2I0M4 334 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 SOHLH1Q5JUK2 328 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 FAM111BQ6SJ93 734 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 NXPE4Q6UWF7 544 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 LBX2Q6XYB7 198 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 OCEL1Q9H607 264 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 CACNA1FO60840 1977 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 SPATA31D1Q6ZQQ2 1576 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 CLN5O75503 358 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 MGST1P10620 155 aaKnown RBP11.18□□□□□ -0.62
SYNPO-202ENST00000394243 PSMB1P20618 241 aaKnown RBP11.18□□□□□ -0.62
SYNPO-202ENST00000394243 APEX1P27695 318 aaKnown RBP11.18□□□□□ -0.62
SYNPO-202ENST00000394243 MRPS34P82930 218 aaKnown RBP11.18□□□□□ -0.62
SYNPO-202ENST00000394243 VEZF1Q14119 521 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 C2orf27AQ580R0 203 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 SERPINA11Q86U17 422 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 SCAMP4Q969E2 229 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 MMABQ96EY8 250 aaPredicted RBP11.18□□□□□ -0.62
SYNPO-202ENST00000394243 SUSD3Q96L08 255 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 MTHFD2LQ9H903 347 aaPredicted RBP11.18□□□□□ -0.62
SYNPO-202ENST00000394243 C5AR2Q9P296 337 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 URGCP-MRPS24S4R325 110 aa11.18□□□□□ -0.62
SYNPO-202ENST00000394243 CD300LBA8K4G0 201 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 SURF4O15260 269 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 PRSS56P0CW18 603 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 DRD2P14416 443 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 TYRP14679 529 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 DEFB134Q4QY38 66 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 OR4N5Q8IXE1 308 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 ZBTB44Q8NCP5 570 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 IL17FQ96PD4 163 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 TXN2Q99757 166 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 KCNIP1Q9NZI2 227 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 IGKV6D-41A0A0C4DH26 115 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 A0A1W2PPV4 95 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 AGAP14A8MT82 685 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 SCO1O75880 301 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 PITX1P78337 314 aaPredicted RBP11.17□□□□□ -0.62
SYNPO-202ENST00000394243 PIP5KL1Q5T9C9 394 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 NIPAL3Q6P499 406 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 Q6ZPB1 254 aaPredicted RBP11.17□□□□□ -0.62
SYNPO-202ENST00000394243 LARP4Q71RC2 724 aaKnown RBP eCLIP11.17□□□□□ -0.62
SYNPO-202ENST00000394243 TMPRSS7Q7RTY8 843 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 ASPGQ86U10 573 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 BAGE3Q86Y29 109 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 BAGE2Q86Y30 109 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 CELF5Q8N6W0 485 aaKnown RBP11.17□□□□□ -0.62
SYNPO-202ENST00000394243 SLC39A13Q96H72 371 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 NECTIN4Q96NY8 510 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 GYPBP06028 91 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 ETV3P41162 512 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 RAB33AQ14088 237 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 ARL6IP1Q15041 203 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 NHSL2Q5HYW2 709 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 C17orf107Q6ZR85 190 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 COMMD6Q7Z4G1 85 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 SLC51BQ86UW2 128 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 LILRA2Q8N149 483 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 PLPP5Q8NEB5 264 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 FAM71F1Q96KD3 344 aaPredicted RBP11.17□□□□□ -0.62
SYNPO-202ENST00000394243 BABAM2Q9NXR7 383 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 USP36Q9P275 1121 aaKnown RBP11.17□□□□□ -0.62
SYNPO-202ENST00000394243 MSRAQ9UJ68 235 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 BACE2Q9Y5Z0 518 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 FAM183AA6NL82 134 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 NDUFB2O95178 105 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 TCRBP04435 133 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 AHRP35869 848 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 GDNFP39905 211 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 CRHR2Q13324 411 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 H3F3CQ6NXT2 135 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 CREB3L4Q8TEY5 395 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 FYTTD1Q96QD9 318 aaKnown RBP11.17□□□□□ -0.62
SYNPO-202ENST00000394243 PGAP2Q9UHJ9 254 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms