RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 ELOVL4Q9GZR5 314 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 SLC17A5Q9NRA2 495 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 RHCEP18577 417 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 ARHGEF7Q14155 803 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 DSN1Q9H410 356 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF346Q9UL40 294 aaKnown RBP3.34□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF816-ZNF321PA0A0X1KG74 233 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 C7orf66A4D0T2 115 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 GABRDO14764 452 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 SLC25A17O43808 307 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 GOT2P00505 430 aaKnown RBP3.34□□□□□ -1.88
SYNE1-201ENST00000341594 IFNA21P01568 189 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 RPS20P60866 119 aaKnown RBP3.34□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF549Q6P9A3 640 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 UNQ6126/PRO20091Q6UXV3 157 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 ABHD13Q7L211 337 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 STYXQ8WUJ0 223 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 TMEM80Q96HE8 168 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 SYT17Q9BSW7 474 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 PINK1Q9BXM7 581 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 GLOD4Q9HC38 313 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 TMED3Q9Y3Q3 217 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 MYO9AB2RTY4 2548 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 PPP1R11O60927 126 aaPredicted RBP3.34□□□□□ -1.88
SYNE1-201ENST00000341594 MT-ATP6P00846 226 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 PRH1P02810 166 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 TAS2R39P59534 338 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 C9orf152Q5JTZ5 239 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 ETV3LQ6ZN32 361 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 RNF180Q86T96 592 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 CLRN3Q8NCR9 226 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 SCAMP5Q8TAC9 235 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 ABHD16BQ9H3Z7 469 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 SLC28A3Q9HAS3 691 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 GLYATL1P3A0A0U1RQE8 302 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 TOR1AO14656 332 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 RAF1P04049 648 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 AHCYP23526 432 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 ENTHD1Q8IYW4 607 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 OTUB2Q96DC9 234 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 FAM83DQ9H4H8 585 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 TMEM248Q9NWD8 314 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 RHOP08100 348 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 PTPRZ1P23471 2315 aaPredicted RBP3.34□□□□□ -1.88
SYNE1-201ENST00000341594 RBM11P57052 281 aaKnown RBP3.34□□□□□ -1.88
SYNE1-201ENST00000341594 YPEL5P62699 121 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 TNFAIP1Q13829 316 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 DUOXA1Q1HG43 343 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 NUDT13Q86X67 352 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 NKAIN4Q8IVV8 208 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 PTP4A1Q93096 173 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 A0A1B0GTH9 108 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 KANTRA0A1W2PQU2 76 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 GALNT2Q10471 571 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 FAM205BPQ63HN1 556 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF470Q6ECI4 717 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 FSTL4Q6MZW2 842 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 FSTL5Q8N475 847 aaPredicted RBP3.34□□□□□ -1.88
SYNE1-201ENST00000341594 ADPRHL1Q8NDY3 354 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 TEX101Q9BY14 249 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 DCSTAMPQ9H295 470 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 SEMA6CQ9H3T2 930 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 GULP1Q9UBP9 304 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 USP3Q9Y6I4 520 aa3.34□□□□□ -1.88
SYNE1-201ENST00000341594 ATG13O75143 517 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 SLC2A2P11168 524 aaPredicted RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 HMGA2P52926 109 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 CLDN2P57739 230 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 FXYD6P3P58550 94 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 PEA15Q15121 130 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 SF3A2Q15428 464 aaKnown RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 DCST2Q5T1A1 773 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 AVPI1Q5T686 147 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 LRRN1Q6UXK5 716 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 IFT46Q9NQC8 304 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 FBXW2Q9UKT8 454 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 KCNS2Q9ULS6 477 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 K7ERU9 68 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 ANKRD28O15084 1053 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 SLC34A2O95436 690 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 MT-CYBP00156 380 aaPredicted RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 GSRP00390 522 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 BUD31P41223 144 aaPredicted RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 CRY2Q49AN0 593 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 AQP8O94778 261 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 CST1P01037 141 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 RAET1GQ6H3X3 334 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 CNKSR3Q6P9H4 555 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 TRILQ7L0X0 811 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 REEP1Q9H902 201 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 URGCP-MRPS24S4R325 110 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 GRXCR1A8MXD5 290 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 CAPN5O15484 640 aaPredicted RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 PRAMEF10O60809 474 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 PRDX3P30048 256 aaKnown RBP3.33□□□□□ -1.88
SYNE1-201ENST00000341594 TMUB2Q71RG4 321 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 NUDT22Q9BRQ3 303 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 ACTL8Q9H568 366 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 CRTAC1Q9NQ79 661 aa3.33□□□□□ -1.88
SYNE1-201ENST00000341594 C5AR2Q9P296 337 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms