RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 RAB5AP20339 215 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 TAGLN2P37802 199 aaKnown RBP13.5□□□□□ -0.25
COL7A1-201ENST00000328333 HCCSP53701 268 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 ECH1Q13011 328 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 GRM2Q14416 872 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 HABP2Q14520 560 aaPredicted RBP13.5□□□□□ -0.25
COL7A1-201ENST00000328333 AMZ1Q400G9 498 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 ENTHD1Q8IYW4 607 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 OR10Q1Q8NGQ4 319 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 SLC22A8Q8TCC7 542 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 PCDHGA7Q9Y5G6 932 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 TCRBV3S1A0A5B6 114 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 CYTIPO60759 359 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 PPP1R8Q12972 351 aaKnown RBP13.5□□□□□ -0.25
COL7A1-201ENST00000328333 SFRP4Q6FHJ7 346 aaPredicted RBP13.5□□□□□ -0.25
COL7A1-201ENST00000328333 FIGNL1Q6PIW4 674 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 LARP4Q71RC2 724 aaKnown RBP eCLIP13.5□□□□□ -0.25
COL7A1-201ENST00000328333 CELF5Q8N6W0 485 aaKnown RBP13.5□□□□□ -0.25
COL7A1-201ENST00000328333 OR56B1Q8NGI3 324 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 HRH4Q9H3N8 390 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 TPPPO94811 219 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 SELENOWP63302 87 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 SLC7A5P1Q8MH63 180 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 FRS2Q8WU20 508 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 RBPMSQ93062 196 aaKnown RBP13.5□□□□□ -0.25
COL7A1-201ENST00000328333 PRRC1Q96M27 445 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 OR10A5Q9H207 317 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 OR10A2Q9H208 303 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 C5P01031 1676 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 TMEM200CA6NKL6 621 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 SPI1P17947 270 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 SOWAHAQ2M3V2 549 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 LRFN4Q6PJG9 635 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 LYRM2Q9NU23 88 aaPredicted RBP13.5□□□□□ -0.25
COL7A1-201ENST00000328333 GMPR2Q9P2T1 348 aaKnown RBP13.5□□□□□ -0.25
COL7A1-201ENST00000328333 PADI3Q9ULW8 664 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 SLC35A3Q9Y2D2 325 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 CNR2P34972 360 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 SF3B4Q15427 424 aaKnown RBP eCLIP13.5□□□□□ -0.25
COL7A1-201ENST00000328333 SLC10A6Q3KNW5 377 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 IL17RDQ8NFM7 739 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 BTNL2Q9UIR0 455 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 VEGFAP15692 232 aaPredicted RBP13.5□□□□□ -0.25
COL7A1-201ENST00000328333 FDXRP22570 491 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 GPR4P46093 362 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 CD276Q5ZPR3 534 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 SSX7Q7RTT5 188 aa13.5□□□□□ -0.25
COL7A1-201ENST00000328333 ADAM23O75077 832 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 ALPIP09923 528 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 PSMB1P20618 241 aaKnown RBP13.49□□□□□ -0.25
COL7A1-201ENST00000328333 TSFMP43897 325 aaKnown RBP13.49□□□□□ -0.25
COL7A1-201ENST00000328333 PCBP2Q15366 365 aaKnown RBP eCLIP13.49□□□□□ -0.25
COL7A1-201ENST00000328333 COL13A1Q5TAT6 717 aaPredicted RBP13.49□□□□□ -0.25
COL7A1-201ENST00000328333 PLBD1Q6P4A8 553 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 RPL22L1Q6P5R6 122 aaKnown RBP13.49□□□□□ -0.25
COL7A1-201ENST00000328333 OR51A7Q8NH64 312 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 INTS14Q96SY0 518 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 C12orf10Q9HB07 376 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 IL21RQ9HBE5 538 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 K7EQM0 130 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 GABRA3P34903 492 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 BTG1P62324 171 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 C22orf39Q6P5X5 142 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 FAM111BQ6SJ93 734 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 NKAIN3Q8N8D7 197 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 NETO2Q8NC67 525 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 OR5L1Q8NGL2 311 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 RRAGCQ9HB90 399 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 NWD2Q9ULI1 1742 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 AGPAT2O15120 278 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 SERPINA5P05154 406 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 GABRB3P28472 473 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 PCBD1P61457 104 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 ADARB1P78563 741 aaKnown RBP13.49□□□□□ -0.25
COL7A1-201ENST00000328333 PLCXD2Q0VAA5 305 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 NKPD1Q17RQ9 610 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 SPATC1Q76KD6 591 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.49□□□□□ -0.25
COL7A1-201ENST00000328333 TOGARAM1Q9Y4F4 1720 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 WASH4PA8MWX3 477 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 CCNOP22674 350 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 GCNT2Q8N0V5 402 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 CACFD1Q9UGQ2 172 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 COPS3Q9UNS2 423 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 A0A0U1RQK1 487 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 A0A1B0GV50 99 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 SLC31A1O15431 190 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 ACP2P11117 423 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 OR52E2Q8NGJ4 325 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 FGFBP2Q9BYJ0 223 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 FZD8Q9H461 694 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 KIAA2026Q5HYC2 2103 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 TSPAN6O43657 245 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 GALTP07902 379 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 SPP1P10451 314 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 CPOXP36551 454 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 TBPL1P62380 186 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 RAB11AP62491 216 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 MGAT3Q09327 533 aa13.49□□□□□ -0.25
COL7A1-201ENST00000328333 POU4F3Q15319 338 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms