RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 TCRBP04435 133 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 ACP2P11117 423 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 HOXA9P31269 272 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 GABRA5P31644 462 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 CCR6P51684 374 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 CRYZQ08257 329 aaKnown RBP14.42□□□□□ -0.1
SHH-201ENST00000297261 HYAL2Q12891 473 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 BEX5Q5H9J7 111 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 ALG1LQ6GMV1 187 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 KANSL1Q7Z3B3 1105 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 OR4N5Q8IXE1 308 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 RAB7BQ96AH8 199 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 NOX3Q9HBY0 568 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 ACSL5Q9ULC5 683 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 F5H5P2 479 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 TOR1AO14656 332 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 AGPAT2O15120 278 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 AMY2AP04746 511 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 SNRPBP14678 240 aaKnown RBP14.42□□□□□ -0.1
SHH-201ENST00000297261 SHC1P29353 583 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 RORAP35398 523 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 ARHGDIBP52566 201 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 ZNF77Q15935 545 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 SAXO2Q658L1 398 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 OR56B4Q8NH76 319 aa14.42□□□□□ -0.1
SHH-201ENST00000297261 SSX4O60224 188 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 FZD7O75084 574 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 ADH1BP00325 375 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 ASGR2P07307 311 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 ACTR1BP42025 376 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 CTSCP53634 463 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 DLX5P56178 289 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 ACTR1AP61163 376 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 ASAH1Q13510 395 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 FGL2Q14314 439 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 CST6Q15828 149 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 TCTE1Q5JU00 501 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 METAP1DQ6UB28 335 aaPredicted RBP14.41□□□□□ -0.1
SHH-201ENST00000297261 DPPA4Q7L190 304 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 GLCCI1Q86VQ1 547 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 ZNF454Q8N9F8 522 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 OR6F1Q8NGZ6 308 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 FAM171A2A8MVW0 826 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 LILRA6Q6PI73 481 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 FIGNL1Q6PIW4 674 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 TMEM150AQ86TG1 271 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 NRSN1Q8IZ57 195 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 OR4E2Q8NGC2 313 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 OR8J2Q8NGG1 315 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 DHRS9Q9BPW9 319 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 EMC8O43402 210 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 PRAF2O60831 178 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 SFTPBP07988 381 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 SLC1A3P43003 542 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 CDNFQ49AH0 187 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 TANGO2Q6ICL3 276 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 ZNF584Q8IVC4 421 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 HORMAD2Q8N7B1 307 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 ZNF566Q969W8 418 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 TMEM41AQ96HV5 264 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 PPT2Q9UMR5 302 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 KLF8O95600 359 aaPredicted RBP14.41□□□□□ -0.1
SHH-201ENST00000297261 ARAFP10398 606 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 TAS2R38P59533 333 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 ILF3Q12906 894 aaKnown RBP eCLIP14.41□□□□□ -0.1
SHH-201ENST00000297261 TOMM20Q15388 145 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 SHHQ15465 462 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 STK11Q15831 433 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 C18orf63Q68DL7 685 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 APOOLQ6UXV4 268 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 TMEM163Q8TC26 289 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 LMF1Q96S06 567 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 ZNF236Q9UL36 1845 aa14.41□□□□□ -0.1
SHH-201ENST00000297261 TAPBPO15533 448 aa14.4□□□□□ -0.1
SHH-201ENST00000297261 HMGN2P05204 90 aaKnown RBP14.4□□□□□ -0.1
SHH-201ENST00000297261 IGFBP1P08833 259 aaPredicted RBP14.4□□□□□ -0.1
SHH-201ENST00000297261 LIPCP11150 499 aa14.4□□□□□ -0.1
SHH-201ENST00000297261 PSMB10P40306 273 aa14.4□□□□□ -0.1
SHH-201ENST00000297261 EIF1AXP47813 144 aaKnown RBP14.4□□□□□ -0.1
SHH-201ENST00000297261 PIP5KL1Q5T9C9 394 aa14.4□□□□□ -0.1
SHH-201ENST00000297261 ASB11Q8WXH4 323 aa14.4□□□□□ -0.1
SHH-201ENST00000297261 SLC41A3Q96GZ6 507 aa14.4□□□□□ -0.1
SHH-201ENST00000297261 F5P12259 2224 aa14.4□□□□□ -0.1
SHH-201ENST00000297261 ZNF878C9JN71 531 aa14.4□□□□□ -0.1
SHH-201ENST00000297261 ITGB7P26010 798 aa14.4□□□□□ -0.1
SHH-201ENST00000297261 NNATQ16517 81 aa14.4□□□□□ -0.1
SHH-201ENST00000297261 OCLNQ16625 522 aa14.4□□□□□ -0.1
SHH-201ENST00000297261 NKPD1Q17RQ9 610 aa14.4□□□□□ -0.1
SHH-201ENST00000297261 GAL3ST3Q96A11 431 aa14.4□□□□□ -0.1
SHH-201ENST00000297261 CMKLR1Q99788 373 aa14.4□□□□□ -0.1
SHH-201ENST00000297261 TREX2Q9BQ50 279 aaPredicted RBP14.4□□□□□ -0.1
SHH-201ENST00000297261 BRF2Q9HAW0 419 aa14.4□□□□□ -0.1
SHH-201ENST00000297261 WASH6PQ9NQA3 447 aa14.4□□□□□ -0.1
SHH-201ENST00000297261 PTTG3PQ9NZH4 202 aa14.4□□□□□ -0.1
SHH-201ENST00000297261 TMEFF2Q9UIK5 374 aaPredicted RBP14.4□□□□□ -0.1
SHH-201ENST00000297261 RP1L1Q8IWN7 2480 aaPredicted RBP14.4□□□□□ -0.1
SHH-201ENST00000297261 A0A1B0GV50 99 aa14.4□□□□□ -0.1
SHH-201ENST00000297261 C1orf196B1AJZ1 125 aa14.4□□□□□ -0.1
SHH-201ENST00000297261 EIF1AYO14602 144 aaKnown RBP14.4□□□□□ -0.1
SHH-201ENST00000297261 UGDHO60701 494 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms