RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 C9JVG2 144 aa16.59■□□□□ 0.25
CLN3-259ENST00000637551 NPIPA2E9PIF3 369 aa16.59■□□□□ 0.25
CLN3-259ENST00000637551 NPIPA3F8WFD2 350 aa16.59■□□□□ 0.25
CLN3-259ENST00000637551 DNAJA2O60884 412 aa16.59■□□□□ 0.25
CLN3-259ENST00000637551 PDE9AO76083 593 aa16.59■□□□□ 0.25
CLN3-259ENST00000637551 NPPAP01160 153 aa16.59■□□□□ 0.25
CLN3-259ENST00000637551 NCF2P19878 526 aaPredicted RBP16.59■□□□□ 0.25
CLN3-259ENST00000637551 ADH6P28332 368 aa16.59■□□□□ 0.25
CLN3-259ENST00000637551 EIF1P41567 113 aaKnown RBP16.59■□□□□ 0.25
CLN3-259ENST00000637551 RPS26P62854 115 aaKnown RBP16.59■□□□□ 0.25
CLN3-259ENST00000637551 MAPRE2Q15555 327 aa16.59■□□□□ 0.25
CLN3-259ENST00000637551 TMEM44Q2T9K0 475 aa16.59■□□□□ 0.25
CLN3-259ENST00000637551 AGKQ53H12 422 aa16.59■□□□□ 0.25
CLN3-259ENST00000637551 CCNJQ5T5M9 372 aa16.59■□□□□ 0.25
CLN3-259ENST00000637551 ZAR1Q86SH2 424 aa16.59■□□□□ 0.25
CLN3-259ENST00000637551 MARCH3Q86UD3 253 aa16.59■□□□□ 0.25
CLN3-259ENST00000637551 ZNF619Q8N2I2 560 aa16.59■□□□□ 0.25
CLN3-259ENST00000637551 OR14L1PQ8NHC6 308 aa16.59■□□□□ 0.25
CLN3-259ENST00000637551 ZPLD1Q8TCW7 415 aa16.59■□□□□ 0.25
CLN3-259ENST00000637551 XAGE5Q8WWM1 108 aa16.59■□□□□ 0.25
CLN3-259ENST00000637551 ABTB1Q969K4 478 aaPredicted RBP16.59■□□□□ 0.25
CLN3-259ENST00000637551 ARSGQ96EG1 525 aa16.59■□□□□ 0.25
CLN3-259ENST00000637551 CCDC120Q96HB5 630 aa16.59■□□□□ 0.25
CLN3-259ENST00000637551 TIMP4Q99727 224 aa16.59■□□□□ 0.25
CLN3-259ENST00000637551 FLRT3Q9NZU0 649 aa16.59■□□□□ 0.25
CLN3-259ENST00000637551 P2RX2Q9UBL9 471 aa16.59■□□□□ 0.25
CLN3-259ENST00000637551 SLC35A3Q9Y2D2 325 aa16.59■□□□□ 0.25
CLN3-259ENST00000637551 WDR45Q9Y484 360 aa16.59■□□□□ 0.25
CLN3-259ENST00000637551 KLF2Q9Y5W3 355 aaPredicted RBP16.59■□□□□ 0.25
CLN3-259ENST00000637551 KCNE3Q9Y6H6 103 aa16.59■□□□□ 0.25
CLN3-259ENST00000637551 TRBV5-3A0A0A0MS03 114 aa16.58■□□□□ 0.24
CLN3-259ENST00000637551 C15orf38-AP3S2A0A0A6YYH1 394 aa16.58■□□□□ 0.24
CLN3-259ENST00000637551 TMEM247A6NEH6 219 aa16.58■□□□□ 0.24
CLN3-259ENST00000637551 BBIP1A8MTZ0 92 aa16.58■□□□□ 0.24
CLN3-259ENST00000637551 ETV2O00321 342 aaPredicted RBP16.58■□□□□ 0.24
CLN3-259ENST00000637551 NR5A2O00482 541 aa16.58■□□□□ 0.24
CLN3-259ENST00000637551 ZIC3O60481 467 aa16.58■□□□□ 0.24
CLN3-259ENST00000637551 OR12D1P0DN82 309 aa16.58■□□□□ 0.24
CLN3-259ENST00000637551 BMP7P18075 431 aa16.58■□□□□ 0.24
CLN3-259ENST00000637551 CAPN3P20807 821 aa16.58■□□□□ 0.24
CLN3-259ENST00000637551 ELK4P28324 431 aa16.58■□□□□ 0.24
CLN3-259ENST00000637551 ART3Q13508 389 aa16.58■□□□□ 0.24
CLN3-259ENST00000637551 TOMM20Q15388 145 aa16.58■□□□□ 0.24
CLN3-259ENST00000637551 CGB2Q6NT52 195 aa16.58■□□□□ 0.24
CLN3-259ENST00000637551 TNFAIP8L2Q6P589 184 aaPredicted RBP16.58■□□□□ 0.24
CLN3-259ENST00000637551 B3GNT6Q6ZMB0 384 aa16.58■□□□□ 0.24
CLN3-259ENST00000637551 FAM71CQ8NEG0 241 aa16.58■□□□□ 0.24
CLN3-259ENST00000637551 ZFP3Q96NJ6 502 aa16.58■□□□□ 0.24
CLN3-259ENST00000637551 UGT2B28Q9BY64 529 aa16.58■□□□□ 0.24
CLN3-259ENST00000637551 NSRP1Q9H0G5 558 aaKnown RBP16.58■□□□□ 0.24
CLN3-259ENST00000637551 DSN1Q9H410 356 aa16.58■□□□□ 0.24
CLN3-259ENST00000637551 MTHFD2LQ9H903 347 aaPredicted RBP16.58■□□□□ 0.24
CLN3-259ENST00000637551 EXOSC3Q9NQT5 275 aaKnown RBP16.58■□□□□ 0.24
CLN3-259ENST00000637551 FBXO34Q9NWN3 711 aa16.58■□□□□ 0.24
CLN3-259ENST00000637551 NDUFAF1Q9Y375 327 aa16.58■□□□□ 0.24
CLN3-259ENST00000637551 PCDHB14Q9Y5E9 798 aa16.58■□□□□ 0.24
CLN3-259ENST00000637551 PCNX3Q9H6A9 2034 aa16.57■□□□□ 0.24
CLN3-259ENST00000637551 DSPPQ9NZW4 1301 aa16.57■□□□□ 0.24
CLN3-259ENST00000637551 CD8B2A6NJW9 211 aa16.57■□□□□ 0.24
CLN3-259ENST00000637551 CLIC1O00299 241 aa16.57■□□□□ 0.24
CLN3-259ENST00000637551 ANGPT2O15123 496 aa16.57■□□□□ 0.24
CLN3-259ENST00000637551 PEPDP12955 493 aa16.57■□□□□ 0.24
CLN3-259ENST00000637551 RPS4Y1P22090 263 aaKnown RBP16.57■□□□□ 0.24
CLN3-259ENST00000637551 P2RX1P51575 399 aa16.57■□□□□ 0.24
CLN3-259ENST00000637551 CRISP3P54108 245 aa16.57■□□□□ 0.24
CLN3-259ENST00000637551 EEFSECP57772 596 aaKnown RBP16.57■□□□□ 0.24
CLN3-259ENST00000637551 FUT5Q11128 374 aa16.57■□□□□ 0.24
CLN3-259ENST00000637551 RGNQ15493 299 aa16.57■□□□□ 0.24
CLN3-259ENST00000637551 EIPR1Q53HC9 387 aa16.57■□□□□ 0.24
CLN3-259ENST00000637551 WIPI1Q5MNZ9 446 aaPredicted RBP16.57■□□□□ 0.24
CLN3-259ENST00000637551 TYW3Q6IPR3 259 aaKnown RBP16.57■□□□□ 0.24
CLN3-259ENST00000637551 FRRS1Q6ZNA5 592 aa16.57■□□□□ 0.24
CLN3-259ENST00000637551 EIF3MQ7L2H7 374 aaKnown RBP16.57■□□□□ 0.24
CLN3-259ENST00000637551 LACC1Q8IV20 430 aa16.57■□□□□ 0.24
CLN3-259ENST00000637551 ULK2Q8IYT8 1036 aa16.57■□□□□ 0.24
CLN3-259ENST00000637551 GTPBP8Q8N3Z3 284 aaPredicted RBP16.57■□□□□ 0.24
CLN3-259ENST00000637551 B4GALNT2Q8NHY0 566 aa16.57■□□□□ 0.24
CLN3-259ENST00000637551 ASB5Q8WWX0 329 aa16.57■□□□□ 0.24
CLN3-259ENST00000637551 OTUB1Q96FW1 271 aaPredicted RBP16.57■□□□□ 0.24
CLN3-259ENST00000637551 SFXN2Q96NB2 322 aa16.57■□□□□ 0.24
CLN3-259ENST00000637551 RTN4RQ9BZR6 473 aa16.57■□□□□ 0.24
CLN3-259ENST00000637551 CALHM2Q9HA72 323 aa16.57■□□□□ 0.24
CLN3-259ENST00000637551 PNPLA3Q9NST1 481 aa16.57■□□□□ 0.24
CLN3-259ENST00000637551 ICAM5Q9UMF0 924 aa16.57■□□□□ 0.24
CLN3-259ENST00000637551 AP4B1Q9Y6B7 739 aa16.57■□□□□ 0.24
CLN3-259ENST00000637551 MED12Q93074 2177 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 SERINC4A6NH21 518 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 B4DXG7 233 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 ZNF264O43296 627 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 UGT2B17O75795 530 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 SNRPB2P08579 225 aaKnown RBP16.56■□□□□ 0.24
CLN3-259ENST00000637551 UBL4AP11441 157 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 ZNF708P17019 499 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 TIMP3P35625 211 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 ZNF41P51814 821 aaPredicted RBP16.56■□□□□ 0.24
CLN3-259ENST00000637551 DLX5P56178 289 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 RIPPLY3P57055 190 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 B3GALT5-AS1P59052 145 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 DSTNP60981 165 aa16.56■□□□□ 0.24
CLN3-259ENST00000637551 FGFBP1Q14512 234 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms