RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 PCDHGB4Q9UN71 923 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 MED12LQ86YW9 2145 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 ANKRD17O75179 2603 aaKnown RBP11.3□□□□□ -0.6
UPF1-203ENST00000594504 PCNX3Q9H6A9 2034 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 C2CD3Q4AC94 2353 aa11.3□□□□□ -0.6
UPF1-203ENST00000594504 SCN2BO60939 215 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 SLC22A3O75751 556 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 NKX2-2O95096 273 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 TGM6O95932 706 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 HRGP04196 525 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 PGRP06401 933 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 IL12AP29459 219 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 IL12BP29460 328 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 GCKP35557 465 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 SOAT1P35610 550 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 MAP3K8P41279 467 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 CPA2P48052 419 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 MRPL19P49406 292 aaKnown RBP11.29□□□□□ -0.6
UPF1-203ENST00000594504 PRIM2P49643 509 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 CLDN18P56856 261 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 STX1BP61266 288 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 PHC1P78364 1004 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 IRX1P78414 480 aaPredicted RBP11.29□□□□□ -0.6
UPF1-203ENST00000594504 SORDQ00796 357 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 GUCY1A3Q02108 690 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 LRRC74AQ0VAA2 488 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 GAB1Q13480 694 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 EFR3AQ14156 821 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 DECR1Q16698 335 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 IFNEQ86WN2 208 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 CLECL1Q8IZS7 167 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 MIER2Q8N344 545 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 OR4A15Q8NGL6 344 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 SLC9A6Q92581 669 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 WNT2BQ93097 391 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 EFHD2Q96C19 240 aaPredicted RBP11.29□□□□□ -0.6
UPF1-203ENST00000594504 TM9SF2Q99805 663 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 CCDC134Q9H6E4 229 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 NPHS2Q9NP85 383 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 CLCF1Q9UBD9 225 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 EDARQ9UNE0 448 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 WIF1Q9Y5W5 379 aa11.29□□□□□ -0.6
UPF1-203ENST00000594504 ZNF469Q96JG9 3925 aaPredicted RBP11.29□□□□□ -0.6
UPF1-203ENST00000594504 C9JVG2 144 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 KCNH1O95259 989 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 HMGN2P05204 90 aaKnown RBP11.28□□□□□ -0.6
UPF1-203ENST00000594504 IL6P05231 212 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 KRT16P08779 473 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 ALOX5P09917 674 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 ACP2P11117 423 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 SRD5A2P31213 254 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 GABRA3P34903 492 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 MDH1P40925 334 aaKnown RBP11.28□□□□□ -0.6
UPF1-203ENST00000594504 PNLIPRP2P54317 469 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 GAS1P54826 345 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 PSMD4P55036 377 aaKnown RBP11.28□□□□□ -0.6
UPF1-203ENST00000594504 FAM27E3Q08E93 113 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 TP53BP2Q13625 1128 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 LASP1Q14847 261 aaKnown RBP11.28□□□□□ -0.6
UPF1-203ENST00000594504 EXOSC6Q5RKV6 272 aaKnown RBP11.28□□□□□ -0.6
UPF1-203ENST00000594504 ANKRD46Q86W74 232 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 UBQLNLQ8IYU4 475 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 SLC16A11Q8NCK7 471 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 OR5M1Q8NGP8 315 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 GPR151Q8TDV0 419 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 SFXN2Q96NB2 322 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 CCDC115Q96NT0 180 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 OR52E6Q96RD3 313 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 UCN2Q96RP3 112 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 SFXN3Q9BWM7 321 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 RTN4RQ9BZR6 473 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 DSN1Q9H410 356 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 GIN1Q9NXP7 522 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 FLRT3Q9NZU0 649 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 C6orf203Q9P0P8 240 aaPredicted RBP11.28□□□□□ -0.6
UPF1-203ENST00000594504 BTNL2Q9UIR0 455 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 DCTN4Q9UJW0 460 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 DKKL1Q9UK85 242 aa11.28□□□□□ -0.6
UPF1-203ENST00000594504 FAF1Q9UNN5 650 aaPredicted RBP11.28□□□□□ -0.6
UPF1-203ENST00000594504 SPG11Q96JI7 2443 aa11.27□□□□□ -0.6
UPF1-203ENST00000594504 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.27□□□□□ -0.61
UPF1-203ENST00000594504 RNF103-CHMP3A0A140T963 221 aa11.27□□□□□ -0.61
UPF1-203ENST00000594504 SH3D21A4FU49 640 aa11.27□□□□□ -0.61
UPF1-203ENST00000594504 A8MXE2 369 aa11.27□□□□□ -0.61
UPF1-203ENST00000594504 H0YC42 278 aa11.27□□□□□ -0.61
UPF1-203ENST00000594504 SCO2O43819 266 aa11.27□□□□□ -0.61
UPF1-203ENST00000594504 TNFSF13O75888 250 aa11.27□□□□□ -0.61
UPF1-203ENST00000594504 SOX30O94993 753 aa11.27□□□□□ -0.61
UPF1-203ENST00000594504 CPSF4O95639 269 aaKnown RBP11.27□□□□□ -0.61
UPF1-203ENST00000594504 IL33O95760 270 aa11.27□□□□□ -0.61
UPF1-203ENST00000594504 VIMP08670 466 aaKnown RBP11.27□□□□□ -0.61
UPF1-203ENST00000594504 TROVE2P10155 538 aaKnown RBP eCLIP11.27□□□□□ -0.61
UPF1-203ENST00000594504 ZNF708P17019 499 aa11.27□□□□□ -0.61
UPF1-203ENST00000594504 CD53P19397 219 aa11.27□□□□□ -0.61
UPF1-203ENST00000594504 DPP4P27487 766 aa11.27□□□□□ -0.61
UPF1-203ENST00000594504 HOXC12P31275 282 aa11.27□□□□□ -0.61
UPF1-203ENST00000594504 CPOXP36551 454 aa11.27□□□□□ -0.61
UPF1-203ENST00000594504 ATP4BP51164 291 aa11.27□□□□□ -0.61
UPF1-203ENST00000594504 POLR2JP52435 117 aaKnown RBP11.27□□□□□ -0.61
UPF1-203ENST00000594504 SUCLG1P53597 346 aaKnown RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms