RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 SNNO75324 88 aaPredicted RBP13.77□□□□□ -0.21
TRIM28-203ENST00000593582 POLQO75417 2590 aa13.77□□□□□ -0.21
TRIM28-203ENST00000593582 TNFRSF21O75509 655 aa13.77□□□□□ -0.21
TRIM28-203ENST00000593582 CRHP06850 196 aa13.77□□□□□ -0.21
TRIM28-203ENST00000593582 CPA2P48052 419 aa13.77□□□□□ -0.21
TRIM28-203ENST00000593582 SUCLG1P53597 346 aaKnown RBP13.77□□□□□ -0.21
TRIM28-203ENST00000593582 TPD52P55327 224 aaPredicted RBP13.77□□□□□ -0.21
TRIM28-203ENST00000593582 CLDN15P56746 228 aa13.77□□□□□ -0.21
TRIM28-203ENST00000593582 CLDN20P56880 219 aa13.77□□□□□ -0.21
TRIM28-203ENST00000593582 RPS3AP61247 264 aaKnown RBP13.77□□□□□ -0.21
TRIM28-203ENST00000593582 OCRLQ01968 901 aa13.77□□□□□ -0.21
TRIM28-203ENST00000593582 DPY19L1Q2PZI1 675 aa13.77□□□□□ -0.21
TRIM28-203ENST00000593582 TMEM44Q2T9K0 475 aa13.77□□□□□ -0.21
TRIM28-203ENST00000593582 FLYWCH1Q4VC44 716 aa13.77□□□□□ -0.21
TRIM28-203ENST00000593582 OGFOD2Q6N063 350 aa13.77□□□□□ -0.21
TRIM28-203ENST00000593582 C6orf120Q7Z4R8 191 aa13.77□□□□□ -0.21
TRIM28-203ENST00000593582 MTERF4Q7Z6M4 381 aaKnown RBP13.77□□□□□ -0.21
TRIM28-203ENST00000593582 CDH24Q86UP0 819 aa13.77□□□□□ -0.21
TRIM28-203ENST00000593582 GTPBP8Q8N3Z3 284 aaPredicted RBP13.77□□□□□ -0.21
TRIM28-203ENST00000593582 OR5D16Q8NGK9 328 aa13.77□□□□□ -0.21
TRIM28-203ENST00000593582 OR4A15Q8NGL6 344 aa13.77□□□□□ -0.21
TRIM28-203ENST00000593582 B4GALNT2Q8NHY0 566 aa13.77□□□□□ -0.21
TRIM28-203ENST00000593582 RAB3IL1Q8TBN0 382 aa13.77□□□□□ -0.21
TRIM28-203ENST00000593582 PHOSPHO1Q8TCT1 267 aa13.77□□□□□ -0.21
TRIM28-203ENST00000593582 SMPDL3BQ92485 455 aa13.77□□□□□ -0.21
TRIM28-203ENST00000593582 ZBTB8AQ96BR9 441 aa13.77□□□□□ -0.21
TRIM28-203ENST00000593582 OR7D2Q96RA2 312 aa13.77□□□□□ -0.21
TRIM28-203ENST00000593582 PINK1Q9BXM7 581 aa13.77□□□□□ -0.21
TRIM28-203ENST00000593582 PIGMQ9H3S5 423 aa13.77□□□□□ -0.21
TRIM28-203ENST00000593582 TMBIM4Q9HC24 238 aa13.77□□□□□ -0.21
TRIM28-203ENST00000593582 KIAA1549Q9HCM3 1950 aa13.77□□□□□ -0.21
TRIM28-203ENST00000593582 PACSIN3Q9UKS6 424 aa13.77□□□□□ -0.21
TRIM28-203ENST00000593582 ZNF175Q9Y473 711 aa13.77□□□□□ -0.21
TRIM28-203ENST00000593582 TUBAL3A6NHL2 446 aa13.76□□□□□ -0.21
TRIM28-203ENST00000593582 TRPC5OSA6NMA1 111 aa13.76□□□□□ -0.21
TRIM28-203ENST00000593582 SHISA8B8ZZ34 492 aa13.76□□□□□ -0.21
TRIM28-203ENST00000593582 ANKRD28O15084 1053 aa13.76□□□□□ -0.21
TRIM28-203ENST00000593582 HDAC3O15379 428 aa13.76□□□□□ -0.21
TRIM28-203ENST00000593582 MATN1P21941 496 aa13.76□□□□□ -0.21
TRIM28-203ENST00000593582 RPS26P62854 115 aaKnown RBP13.76□□□□□ -0.21
TRIM28-203ENST00000593582 SORDQ00796 357 aa13.76□□□□□ -0.21
TRIM28-203ENST00000593582 CD226Q15762 336 aa13.76□□□□□ -0.21
TRIM28-203ENST00000593582 SGCBQ16585 318 aa13.76□□□□□ -0.21
TRIM28-203ENST00000593582 KLHL26Q53HC5 615 aa13.76□□□□□ -0.21
TRIM28-203ENST00000593582 LUZP2Q86TE4 346 aa13.76□□□□□ -0.21
TRIM28-203ENST00000593582 ANKRD46Q86W74 232 aa13.76□□□□□ -0.21
TRIM28-203ENST00000593582 WDR75Q8IWA0 830 aaKnown RBP13.76□□□□□ -0.21
TRIM28-203ENST00000593582 FAM222BQ8WU58 562 aa13.76□□□□□ -0.21
TRIM28-203ENST00000593582 TLCD1Q96CP7 247 aa13.76□□□□□ -0.21
TRIM28-203ENST00000593582 RBM24Q9BX46 236 aaKnown RBP13.76□□□□□ -0.21
TRIM28-203ENST00000593582 MED17Q9NVC6 651 aa13.76□□□□□ -0.21
TRIM28-203ENST00000593582 MARCOQ9UEW3 520 aaPredicted RBP13.76□□□□□ -0.21
TRIM28-203ENST00000593582 KCNE3Q9Y6H6 103 aa13.76□□□□□ -0.21
TRIM28-203ENST00000593582 AKAP9Q99996 3911 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 A0A1W2PNV4 684 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 C7orf72A4D263 438 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 E9PBE3 544 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 SLCO1B7G3V0H7 640 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 GTPBP1O00178 669 aaKnown RBP13.75□□□□□ -0.21
TRIM28-203ENST00000593582 SDHDO14521 159 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 CTAG2O75638 210 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 TNFSF13O75888 250 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 AK1P00568 194 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 KITP10721 976 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 UQCRC2P22695 453 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 ME2P23368 584 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 ATP12AP54707 1039 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 PON3Q15166 354 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 PLPPR5Q32ZL2 321 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 FAM174BQ3ZCQ3 159 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 SPANXN4Q5MJ08 99 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 SPATA19Q7Z5L4 167 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 CLEC4FQ8N1N0 589 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 METTL25Q8N6Q8 603 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 ZNF614Q8N883 585 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 CNEP1R1Q8N9A8 125 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 FNDC9Q8TBE3 224 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 FIG4Q92562 907 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 SLC35G5Q96KT7 338 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 RNF145Q96MT1 663 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 MANSC1Q9H8J5 431 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 EXD2Q9NVH0 621 aa13.75□□□□□ -0.21
TRIM28-203ENST00000593582 NPIPA5A0A0B4J1W7 369 aa13.74□□□□□ -0.21
TRIM28-203ENST00000593582 NPIPA7E9PJI5 369 aa13.74□□□□□ -0.21
TRIM28-203ENST00000593582 EIF1AYO14602 144 aaKnown RBP13.74□□□□□ -0.21
TRIM28-203ENST00000593582 SCN2BO60939 215 aa13.74□□□□□ -0.21
TRIM28-203ENST00000593582 CPSF4O95639 269 aaKnown RBP13.74□□□□□ -0.21
TRIM28-203ENST00000593582 NUDT14O95848 222 aa13.74□□□□□ -0.21
TRIM28-203ENST00000593582 ALDOCP09972 364 aaKnown RBP13.74□□□□□ -0.21
TRIM28-203ENST00000593582 NPIPA8P0DM63 369 aa13.74□□□□□ -0.21
TRIM28-203ENST00000593582 FCGR2AP12318 317 aa13.74□□□□□ -0.21
TRIM28-203ENST00000593582 EPHA3P29320 983 aa13.74□□□□□ -0.21
TRIM28-203ENST00000593582 S100A3P33764 101 aa13.74□□□□□ -0.21
TRIM28-203ENST00000593582 EIF1P41567 113 aaKnown RBP13.74□□□□□ -0.21
TRIM28-203ENST00000593582 EIF1AXP47813 144 aaKnown RBP13.74□□□□□ -0.21
TRIM28-203ENST00000593582 NME5P56597 212 aa13.74□□□□□ -0.21
TRIM28-203ENST00000593582 RAC1P63000 192 aa13.74□□□□□ -0.21
TRIM28-203ENST00000593582 PHC1P78364 1004 aa13.74□□□□□ -0.21
TRIM28-203ENST00000593582 ZNF117Q03924 483 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms