RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 PCBP4P57723 403 aaKnown RBP13.53□□□□□ -0.24
VPS35-210ENST00000568784 RASSF6Q6ZTQ3 369 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 GDF7Q7Z4P5 450 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 COMMD7Q86VX2 200 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 OR13C2Q8NGS9 318 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 PFN4Q8NHR9 129 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 KIAA1143Q96AT1 154 aaPredicted RBP13.53□□□□□ -0.24
VPS35-210ENST00000568784 FUZQ9BT04 418 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 OR52A5Q9H2C5 316 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 FGF20Q9NP95 211 aaPredicted RBP13.53□□□□□ -0.24
VPS35-210ENST00000568784 ACSS1Q9NUB1 689 aaPredicted RBP13.53□□□□□ -0.24
VPS35-210ENST00000568784 FBXL4Q9UKA2 621 aa13.53□□□□□ -0.24
VPS35-210ENST00000568784 PLXND1Q9Y4D7 1925 aa13.52□□□□□ -0.24
VPS35-210ENST00000568784 FAM171A2A8MVW0 826 aa13.52□□□□□ -0.24
VPS35-210ENST00000568784 RPP14O95059 124 aaKnown RBP13.52□□□□□ -0.24
VPS35-210ENST00000568784 HIST1H1TP22492 207 aaPredicted RBP13.52□□□□□ -0.24
VPS35-210ENST00000568784 PSMB10P40306 273 aa13.52□□□□□ -0.24
VPS35-210ENST00000568784 ACSM3Q53FZ2 586 aa13.52□□□□□ -0.24
VPS35-210ENST00000568784 ESCO2Q56NI9 601 aa13.52□□□□□ -0.24
VPS35-210ENST00000568784 CREB3L2Q70SY1 520 aa13.52□□□□□ -0.24
VPS35-210ENST00000568784 ARL14Q8N4G2 192 aa13.52□□□□□ -0.24
VPS35-210ENST00000568784 PXYLP1Q8TE99 480 aa13.52□□□□□ -0.24
VPS35-210ENST00000568784 APOBEC4Q8WW27 367 aaKnown RBP13.52□□□□□ -0.24
VPS35-210ENST00000568784 CHFRQ96EP1 664 aa13.52□□□□□ -0.24
VPS35-210ENST00000568784 MRGPRX3Q96LB0 322 aa13.52□□□□□ -0.24
VPS35-210ENST00000568784 ABHD1Q96SE0 405 aa13.52□□□□□ -0.24
VPS35-210ENST00000568784 GTPBP2Q9BX10 602 aaKnown RBP13.52□□□□□ -0.24
VPS35-210ENST00000568784 SLC25A18Q9H1K4 315 aa13.52□□□□□ -0.24
VPS35-210ENST00000568784 C5orf42Q9H799 3197 aa13.52□□□□□ -0.24
VPS35-210ENST00000568784 A0A1B0GVT2 93 aa13.52□□□□□ -0.25
VPS35-210ENST00000568784 SLC9A3R1O14745 358 aaPredicted RBP13.52□□□□□ -0.25
VPS35-210ENST00000568784 H2AFB2P0C5Z0 115 aa13.52□□□□□ -0.25
VPS35-210ENST00000568784 F8A1P23610 371 aa13.52□□□□□ -0.25
VPS35-210ENST00000568784 BCL6P41182 706 aa13.52□□□□□ -0.25
VPS35-210ENST00000568784 SOX9P48436 509 aa13.52□□□□□ -0.25
VPS35-210ENST00000568784 ZMYND11Q15326 602 aa13.52□□□□□ -0.25
VPS35-210ENST00000568784 HES5Q5TA89 166 aa13.52□□□□□ -0.25
VPS35-210ENST00000568784 SLC44A3Q8N4M1 653 aa13.52□□□□□ -0.25
VPS35-210ENST00000568784 MEIOBQ8N635 442 aa13.52□□□□□ -0.25
VPS35-210ENST00000568784 GLTPQ9NZD2 209 aa13.52□□□□□ -0.25
VPS35-210ENST00000568784 FLVCR2Q9UPI3 526 aa13.52□□□□□ -0.25
VPS35-210ENST00000568784 CDH10Q9Y6N8 788 aa13.52□□□□□ -0.25
VPS35-210ENST00000568784 TCRBP04435 133 aa13.52□□□□□ -0.25
VPS35-210ENST00000568784 ACADLP28330 430 aa13.52□□□□□ -0.25
VPS35-210ENST00000568784 PPM1AP35813 382 aa13.52□□□□□ -0.25
VPS35-210ENST00000568784 OC90Q02509 493 aaPredicted RBP13.52□□□□□ -0.25
VPS35-210ENST00000568784 PSRC1Q6PGN9 363 aaPredicted RBP13.52□□□□□ -0.25
VPS35-210ENST00000568784 DNAJA4Q8WW22 397 aaPredicted RBP13.52□□□□□ -0.25
VPS35-210ENST00000568784 GIMAP1Q8WWP7 306 aa13.52□□□□□ -0.25
VPS35-210ENST00000568784 INSM2Q96T92 566 aaPredicted RBP13.52□□□□□ -0.25
VPS35-210ENST00000568784 ORAI3Q9BRQ5 295 aa13.52□□□□□ -0.25
VPS35-210ENST00000568784 HCAR1Q9BXC0 346 aa13.52□□□□□ -0.25
VPS35-210ENST00000568784 C1QTNF6Q9BXI9 259 aa13.52□□□□□ -0.25
VPS35-210ENST00000568784 NLGN3Q9NZ94 848 aa13.52□□□□□ -0.25
VPS35-210ENST00000568784 GNG8Q9UK08 70 aa13.52□□□□□ -0.25
VPS35-210ENST00000568784 HEATR5BQ9P2D3 2071 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 UNC119BA6NIH7 251 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 SURF4O15260 269 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 GMFGO60234 142 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 PPP1R3DO95685 299 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 ZNF250P15622 560 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 RAB3BP20337 219 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 TBXA2RP21731 343 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 POU6F2P78424 691 aaPredicted RBP13.51□□□□□ -0.25
VPS35-210ENST00000568784 SNTA1Q13424 505 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 TMEM91Q6ZNR0 172 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 ERN2Q76MJ5 926 aaKnown RBP13.51□□□□□ -0.25
VPS35-210ENST00000568784 RNF44Q7L0R7 432 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 LRRC28Q86X40 367 aaPredicted RBP13.51□□□□□ -0.25
VPS35-210ENST00000568784 NRSN1Q8IZ57 195 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 COX18Q8N8Q8 333 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 OR4K13Q8NH42 304 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 OR5K2Q8NHB8 316 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 CREB3L1Q96BA8 519 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 MARVELD1Q9BSK0 173 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 SLC38A1Q9H2H9 487 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 PIGUQ9H490 435 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 WDR26Q9H7D7 661 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 CEP290O15078 2479 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 COL4A4P53420 1690 aaPredicted RBP13.51□□□□□ -0.25
VPS35-210ENST00000568784 LRIT2A6NDA9 550 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 CHP2O43745 196 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 TBX6O95947 436 aaPredicted RBP13.51□□□□□ -0.25
VPS35-210ENST00000568784 DRD2P14416 443 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 AP2S1P53680 142 aaPredicted RBP13.51□□□□□ -0.25
VPS35-210ENST00000568784 SGCGQ13326 291 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 RANBP3LQ86VV4 465 aaPredicted RBP13.51□□□□□ -0.25
VPS35-210ENST00000568784 ZNF680Q8NEM1 530 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 RPLP0P6Q8NHW5 317 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 VOPP1Q96AW1 172 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 PCBD2Q9H0N5 130 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 METTL17Q9H7H0 456 aaPredicted RBP13.51□□□□□ -0.25
VPS35-210ENST00000568784 SLC22A5O76082 557 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 OR7A10O76100 309 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 EPPINO95925 133 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 RLN1P04808 185 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 TEAD1P28347 426 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 CTNNB1P35222 781 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 PTGS2P35354 604 aa13.51□□□□□ -0.25
VPS35-210ENST00000568784 ERVFC1P60507 584 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms