RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 ANKRD17O75179 2603 aaKnown RBP8.91□□□□□ -0.98
CLK3-208ENST00000562626 RP1L1Q8IWN7 2480 aaPredicted RBP8.91□□□□□ -0.98
CLK3-208ENST00000562626 IGLV3-32A0A0A0MS00 114 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 A0A1W2PQD3 144 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 TFECO14948 347 aaPredicted RBP8.9□□□□□ -0.98
CLK3-208ENST00000562626 ZIC3O60481 467 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 TPST1O60507 370 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 SNX4O95219 450 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 AK1P00568 194 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 GUSBP08236 651 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 ATP6V1C1P21283 382 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 GDF1P27539 372 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 AQP1P29972 269 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 MASP1P48740 699 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 SLC7A2P52569 658 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 PSMD4P55036 377 aaKnown RBP8.9□□□□□ -0.98
CLK3-208ENST00000562626 SLC25A3Q00325 362 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 SNTA1Q13424 505 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 FGFBP1Q14512 234 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 TOMM34Q15785 309 aaPredicted RBP8.9□□□□□ -0.98
CLK3-208ENST00000562626 GLIPR1L2Q4G1C9 344 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 WIPI1Q5MNZ9 446 aaPredicted RBP8.9□□□□□ -0.98
CLK3-208ENST00000562626 TBCELQ5QJ74 424 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 DCST1Q5T197 706 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 ATAD3BQ5T9A4 648 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 ARSKQ6UWY0 536 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 HACD2Q6Y1H2 254 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 ZNF836Q6ZNA1 936 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 TRILQ7L0X0 811 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 YRDCQ86U90 279 aaKnown RBP8.9□□□□□ -0.98
CLK3-208ENST00000562626 PACS2Q86VP3 889 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 PLCZ1Q86YW0 608 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 FAM109AQ8N4B1 249 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 ZNF614Q8N883 585 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 PCYOX1LQ8NBM8 494 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 FAM98AQ8NCA5 519 aaKnown RBP8.9□□□□□ -0.98
CLK3-208ENST00000562626 FAM83FQ8NEG4 500 aaPredicted RBP8.9□□□□□ -0.98
CLK3-208ENST00000562626 OR5M1Q8NGP8 315 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 OR1J4Q8NGS1 313 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 DNAJB8Q8NHS0 232 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 CNOT9Q92600 299 aaKnown RBP8.9□□□□□ -0.98
CLK3-208ENST00000562626 GPR137Q96N19 417 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 WFDC6Q9BQY6 131 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 TBL1XR1Q9BZK7 514 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 TMEM38AQ9H6F2 299 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 PLSCR2Q9NRY7 297 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 RYDENQ9NUL5 291 aaKnown RBP8.9□□□□□ -0.98
CLK3-208ENST00000562626 MRGBPQ9NV56 204 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 P2RX2Q9UBL9 471 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 TAGLN3Q9UI15 199 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 BOKQ9UMX3 212 aaPredicted RBP8.9□□□□□ -0.98
CLK3-208ENST00000562626 LIPT1Q9Y234 373 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 CARD8Q9Y2G2 431 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 SLC6A5Q9Y345 797 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 DTNAQ9Y4J8 743 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 PCDHGB3Q9Y5G1 929 aa8.9□□□□□ -0.98
CLK3-208ENST00000562626 CACNA1CQ13936 2221 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 PTPN13Q12923 2485 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 UBR5O95071 2799 aaPredicted RBP8.89□□□□□ -0.99
CLK3-208ENST00000562626 HCFC1P51610 2035 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 SERINC4A6NH21 518 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 AGAP5A6NIR3 686 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 EVPLLA8MZ36 301 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 TMEM229AB2RXF0 380 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 SCDO00767 359 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 AP3D1O14617 1153 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 FRS3O43559 492 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 NDUFB5O43674 189 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 CDC40O60508 579 aaKnown RBP eCLIP8.89□□□□□ -0.99
CLK3-208ENST00000562626 UBOX5O94941 541 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 PGM3O95394 542 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 AGR2O95994 175 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 CRYABP02511 175 aaKnown RBP8.89□□□□□ -0.99
CLK3-208ENST00000562626 OPN1SWP03999 348 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 HPNP05981 417 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 GNLYP22749 145 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 PPIBP23284 216 aaKnown RBP8.89□□□□□ -0.99
CLK3-208ENST00000562626 LCN1P31025 176 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 CPOXP36551 454 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 PGM1P36871 562 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 MAGEA8P43361 318 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 PCBP3P57721 371 aaKnown RBP8.89□□□□□ -0.99
CLK3-208ENST00000562626 B3GALT5-AS1P59052 145 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 PSME3P61289 254 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 RPP38P78345 283 aaKnown RBP8.89□□□□□ -0.99
CLK3-208ENST00000562626 TXNL4AP83876 142 aaKnown RBP8.89□□□□□ -0.99
CLK3-208ENST00000562626 CBX1P83916 185 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 CDK6Q00534 326 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 SKP2Q13309 424 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 SCARB2Q14108 478 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 KRT72Q14CN4 511 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 C3AR1Q16581 482 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 CYP51A1Q16850 503 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 RINLQ6ZS11 566 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 CLIP4Q8N3C7 705 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 RNF148Q8N7C7 305 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 FAM71CQ8NEG0 241 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 OR8J3Q8NGG0 315 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 POC1BQ8TC44 478 aa8.89□□□□□ -0.99
CLK3-208ENST00000562626 PHOSPHO1Q8TCT1 267 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms