RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 S100A3P33764 101 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 CLNS1AP54105 237 aaKnown RBP14.13□□□□□ -0.15
VPS39-203ENST00000561797 CLDN15P56746 228 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 CLDN20P56880 219 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 UFM1P61960 85 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 CD226Q15762 336 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 FLYWCH1Q4VC44 716 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 SPANXN4Q5MJ08 99 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 ANXA8L1Q5VT79 327 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 NXNQ6DKJ4 435 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 OGFOD2Q6N063 350 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 ZZZ3Q8IYH5 903 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 LRRC34Q8IZ02 419 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 ZNF614Q8N883 585 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 VPS37AQ8NEZ2 397 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 ARL8AQ96BM9 186 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 TESCQ96BS2 214 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 ZFP3Q96NJ6 502 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 NPAS1Q99742 590 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 KLHDC3Q9BQ90 382 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 PINK1Q9BXM7 581 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 SERHL2Q9H4I8 314 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 SLC24A3Q9HC58 644 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 HHATLQ9HCP6 504 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 AIG1Q9NVV5 245 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 FBN2P35556 2912 aa14.13□□□□□ -0.15
VPS39-203ENST00000561797 LRBAP50851 2863 aa14.12□□□□□ -0.15
VPS39-203ENST00000561797 PRSS51A0A1B0GVH4 220 aa14.12□□□□□ -0.15
VPS39-203ENST00000561797 SLC22A20A6NK97 555 aa14.12□□□□□ -0.15
VPS39-203ENST00000561797 C9JVG2 144 aa14.12□□□□□ -0.15
VPS39-203ENST00000561797 SCN2BO60939 215 aa14.12□□□□□ -0.15
VPS39-203ENST00000561797 SOX30O94993 753 aa14.12□□□□□ -0.15
VPS39-203ENST00000561797 OPN1LWP04000 364 aa14.12□□□□□ -0.15
VPS39-203ENST00000561797 KIR2DL3P43628 341 aa14.12□□□□□ -0.15
VPS39-203ENST00000561797 ZNF41P51814 821 aaPredicted RBP14.12□□□□□ -0.15
VPS39-203ENST00000561797 EEFSECP57772 596 aaKnown RBP14.12□□□□□ -0.15
VPS39-203ENST00000561797 OCRLQ01968 901 aa14.12□□□□□ -0.15
VPS39-203ENST00000561797 FAM174BQ3ZCQ3 159 aa14.12□□□□□ -0.15
VPS39-203ENST00000561797 FBXL19-AS1Q494R0 122 aa14.12□□□□□ -0.15
VPS39-203ENST00000561797 AGBL2Q5U5Z8 902 aa14.12□□□□□ -0.15
VPS39-203ENST00000561797 SPATA19Q7Z5L4 167 aa14.12□□□□□ -0.15
VPS39-203ENST00000561797 TMEM200AQ86VY9 491 aa14.12□□□□□ -0.15
VPS39-203ENST00000561797 MISPQ8IVT2 679 aa14.12□□□□□ -0.15
VPS39-203ENST00000561797 ZNF527Q8NB42 609 aa14.12□□□□□ -0.15
VPS39-203ENST00000561797 B4GALNT2Q8NHY0 566 aa14.12□□□□□ -0.15
VPS39-203ENST00000561797 RAB3IL1Q8TBN0 382 aa14.12□□□□□ -0.15
VPS39-203ENST00000561797 TEX37Q96LM6 180 aa14.12□□□□□ -0.15
VPS39-203ENST00000561797 SDF2Q99470 211 aa14.12□□□□□ -0.15
VPS39-203ENST00000561797 SFXN3Q9BWM7 321 aa14.12□□□□□ -0.15
VPS39-203ENST00000561797 HOXD1Q9GZZ0 328 aa14.12□□□□□ -0.15
VPS39-203ENST00000561797 OR51I1Q9H343 314 aa14.12□□□□□ -0.15
VPS39-203ENST00000561797 MED17Q9NVC6 651 aa14.12□□□□□ -0.15
VPS39-203ENST00000561797 AP4B1Q9Y6B7 739 aa14.12□□□□□ -0.15
VPS39-203ENST00000561797 PDZD2O15018 2839 aa14.12□□□□□ -0.15
VPS39-203ENST00000561797 A0A087WZY1 265 aa14.11□□□□□ -0.15
VPS39-203ENST00000561797 DUXAA6NLW8 204 aa14.11□□□□□ -0.15
VPS39-203ENST00000561797 ENO4A6NNW6 628 aa14.11□□□□□ -0.15
VPS39-203ENST00000561797 E9PBE3 544 aa14.11□□□□□ -0.15
VPS39-203ENST00000561797 SLCO1B7G3V0H7 640 aa14.11□□□□□ -0.15
VPS39-203ENST00000561797 GTPBP1O00178 669 aaKnown RBP14.11□□□□□ -0.15
VPS39-203ENST00000561797 OIP5O43482 229 aa14.11□□□□□ -0.15
VPS39-203ENST00000561797 NUDT14O95848 222 aa14.11□□□□□ -0.15
VPS39-203ENST00000561797 UQCRC2P22695 453 aa14.11□□□□□ -0.15
VPS39-203ENST00000561797 ATP12AP54707 1039 aa14.11□□□□□ -0.15
VPS39-203ENST00000561797 RPS3AP61247 264 aaKnown RBP14.11□□□□□ -0.15
VPS39-203ENST00000561797 ZNF117Q03924 483 aa14.11□□□□□ -0.15
VPS39-203ENST00000561797 GPR68Q15743 365 aa14.11□□□□□ -0.15
VPS39-203ENST00000561797 SGCBQ16585 318 aa14.11□□□□□ -0.15
VPS39-203ENST00000561797 DPY19L1Q2PZI1 675 aa14.11□□□□□ -0.15
VPS39-203ENST00000561797 TMEM44Q2T9K0 475 aa14.11□□□□□ -0.15
VPS39-203ENST00000561797 PLPPR5Q32ZL2 321 aa14.11□□□□□ -0.15
VPS39-203ENST00000561797 KLHL26Q53HC5 615 aa14.11□□□□□ -0.15
VPS39-203ENST00000561797 PPP4R4Q6NUP7 873 aa14.11□□□□□ -0.15
VPS39-203ENST00000561797 OLIG3Q7RTU3 272 aa14.11□□□□□ -0.15
VPS39-203ENST00000561797 LUZP2Q86TE4 346 aa14.11□□□□□ -0.15
VPS39-203ENST00000561797 FIG4Q92562 907 aa14.11□□□□□ -0.15
VPS39-203ENST00000561797 ZNF75CPQ92670 426 aaPredicted RBP14.11□□□□□ -0.15
VPS39-203ENST00000561797 ZNF845Q96IR2 970 aaPredicted RBP14.11□□□□□ -0.15
VPS39-203ENST00000561797 ACBD3Q9H3P7 528 aa14.11□□□□□ -0.15
VPS39-203ENST00000561797 JKAMPQ9P055 326 aa14.11□□□□□ -0.15
VPS39-203ENST00000561797 STOML1Q9UBI4 398 aa14.11□□□□□ -0.15
VPS39-203ENST00000561797 FOXD3Q9UJU5 478 aaPredicted RBP14.11□□□□□ -0.15
VPS39-203ENST00000561797 ITGB1BP2Q9UKP3 347 aa14.11□□□□□ -0.15
VPS39-203ENST00000561797 CARD8Q9Y2G2 431 aa14.11□□□□□ -0.15
VPS39-203ENST00000561797 H3BNH8 94 aa14.1□□□□□ -0.15
VPS39-203ENST00000561797 EIF1AYO14602 144 aaKnown RBP14.1□□□□□ -0.15
VPS39-203ENST00000561797 TNFRSF21O75509 655 aa14.1□□□□□ -0.15
VPS39-203ENST00000561797 OR12D1P0DN82 309 aa14.1□□□□□ -0.15
VPS39-203ENST00000561797 ZNF17P17021 662 aa14.1□□□□□ -0.15
VPS39-203ENST00000561797 CAPN3P20807 821 aa14.1□□□□□ -0.15
VPS39-203ENST00000561797 IL12AP29459 219 aa14.1□□□□□ -0.15
VPS39-203ENST00000561797 CHI3L1P36222 383 aaPredicted RBP14.1□□□□□ -0.15
VPS39-203ENST00000561797 CPA2P48052 419 aa14.1□□□□□ -0.15
VPS39-203ENST00000561797 PON3Q15166 354 aa14.1□□□□□ -0.15
VPS39-203ENST00000561797 NDUFAF6Q330K2 333 aa14.1□□□□□ -0.15
VPS39-203ENST00000561797 SLC9B1Q4ZJI4 515 aa14.1□□□□□ -0.15
VPS39-203ENST00000561797 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.1□□□□□ -0.15
VPS39-203ENST00000561797 TNFAIP8L2Q6P589 184 aaPredicted RBP14.1□□□□□ -0.15
VPS39-203ENST00000561797 CBLN3Q6UW01 205 aa14.1□□□□□ -0.15
VPS39-203ENST00000561797 C16orf62Q7Z3J2 963 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms