RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 TMEM179BQ7Z7N9 219 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 SATL1Q86VE3 508 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 CYP4Z1Q86W10 505 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 ZDHHC13Q8IUH4 622 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 ERI1Q8IV48 349 aaKnown RBP10.33□□□□□ -0.76
USP3-218ENST00000560202 TAGAPQ8N103 731 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 SVOPLQ8N434 492 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 CBR4Q8N4T8 237 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 ZNF614Q8N883 585 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 OR5K1Q8NHB7 308 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 FNDC8Q8TC99 324 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 OIT3Q8WWZ8 545 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 SLC29A1Q99808 456 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 ST6GALNAC1Q9NSC7 600 aaPredicted RBP10.33□□□□□ -0.76
USP3-218ENST00000560202 FAIMQ9NVQ4 179 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 P4HTMQ9NXG6 502 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 FLRT3Q9NZU0 649 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 MYOTQ9UBF9 498 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 IL17BQ9UHF5 180 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 CNOT11Q9UKZ1 510 aaKnown RBP10.33□□□□□ -0.76
USP3-218ENST00000560202 SAMHD1Q9Y3Z3 626 aaKnown RBP10.33□□□□□ -0.76
USP3-218ENST00000560202 TESMINQ9Y4I5 508 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 NPFFR2Q9Y5X5 522 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 MRPS18BQ9Y676 258 aaKnown RBP10.33□□□□□ -0.76
USP3-218ENST00000560202 AK5Q9Y6K8 562 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 CCDC88CQ9P219 2028 aa10.33□□□□□ -0.76
USP3-218ENST00000560202 SERINC4A6NH21 518 aa10.32□□□□□ -0.76
USP3-218ENST00000560202 G3V2T6 193 aa10.32□□□□□ -0.76
USP3-218ENST00000560202 SOCS2O14508 198 aa10.32□□□□□ -0.76
USP3-218ENST00000560202 FFAR1O14842 300 aa10.32□□□□□ -0.76
USP3-218ENST00000560202 HS6ST1O60243 411 aa10.32□□□□□ -0.76
USP3-218ENST00000560202 ZNF354AO60765 605 aaPredicted RBP10.32□□□□□ -0.76
USP3-218ENST00000560202 HPP00738 406 aa10.32□□□□□ -0.76
USP3-218ENST00000560202 CYP4B1P13584 511 aa10.32□□□□□ -0.76
USP3-218ENST00000560202 ICAM2P13598 275 aa10.32□□□□□ -0.76
USP3-218ENST00000560202 DNAJA1P31689 397 aaKnown RBP10.32□□□□□ -0.76
USP3-218ENST00000560202 RGS8P57771 180 aaPredicted RBP10.32□□□□□ -0.76
USP3-218ENST00000560202 SPIBQ01892 262 aa10.32□□□□□ -0.76
USP3-218ENST00000560202 CBX3Q13185 183 aa10.32□□□□□ -0.76
USP3-218ENST00000560202 FGFBP1Q14512 234 aa10.32□□□□□ -0.76
USP3-218ENST00000560202 GANABQ14697 944 aaKnown RBP10.32□□□□□ -0.76
USP3-218ENST00000560202 TGIF1Q15583 401 aa10.32□□□□□ -0.76
USP3-218ENST00000560202 ZSWIM7Q19AV6 140 aa10.32□□□□□ -0.76
USP3-218ENST00000560202 KLHL26Q53HC5 615 aa10.32□□□□□ -0.76
USP3-218ENST00000560202 DESI1Q6ICB0 168 aa10.32□□□□□ -0.76
USP3-218ENST00000560202 MRGPREQ86SM8 312 aa10.32□□□□□ -0.76
USP3-218ENST00000560202 ZNF605Q86T29 641 aa10.32□□□□□ -0.76
USP3-218ENST00000560202 RAB43Q86YS6 212 aa10.32□□□□□ -0.76
USP3-218ENST00000560202 GALNT4Q8N4A0 578 aa10.32□□□□□ -0.76
USP3-218ENST00000560202 ZNF527Q8NB42 609 aa10.32□□□□□ -0.76
USP3-218ENST00000560202 KIAA1143Q96AT1 154 aaPredicted RBP10.32□□□□□ -0.76
USP3-218ENST00000560202 NMD3Q96D46 503 aaKnown RBP10.32□□□□□ -0.76
USP3-218ENST00000560202 GPN2Q9H9Y4 310 aaPredicted RBP10.32□□□□□ -0.76
USP3-218ENST00000560202 PLGRKTQ9HBL7 147 aa10.32□□□□□ -0.76
USP3-218ENST00000560202 FBXL4Q9UKA2 621 aa10.32□□□□□ -0.76
USP3-218ENST00000560202 KNTC1P50748 2209 aa10.32□□□□□ -0.76
USP3-218ENST00000560202 OR6C70A6NIJ9 312 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 ZNF701M0R085 212 aaPredicted RBP10.31□□□□□ -0.76
USP3-218ENST00000560202 TNFRSF11BO00300 401 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 SCDO00767 359 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 AP3D1O14617 1153 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 TPST2O60704 377 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 ICOSLGO75144 302 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 UGT2B11O75310 529 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 BCAS1O75363 584 aaPredicted RBP10.31□□□□□ -0.76
USP3-218ENST00000560202 TRMUO75648 421 aaKnown RBP10.31□□□□□ -0.76
USP3-218ENST00000560202 PPM1BO75688 479 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 NADKO95544 446 aaPredicted RBP10.31□□□□□ -0.76
USP3-218ENST00000560202 OXSR1O95747 527 aaPredicted RBP10.31□□□□□ -0.76
USP3-218ENST00000560202 TFAP2AP05549 437 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 LIPCP11150 499 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 HPGDP15428 266 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 NAGAP17050 411 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 FPR1P21462 350 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 TBXA2RP21731 343 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 ARHGDIAP52565 204 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 CDH12P55289 794 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 NUP107P57740 925 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 HOXC5Q00444 222 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 PLAURQ03405 335 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 PIN1Q13526 163 aaPredicted RBP10.31□□□□□ -0.76
USP3-218ENST00000560202 OTUD3Q5T2D3 398 aaPredicted RBP10.31□□□□□ -0.76
USP3-218ENST00000560202 SHQ1Q6PI26 577 aaKnown RBP10.31□□□□□ -0.76
USP3-218ENST00000560202 TBPL2Q6SJ96 375 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 STK32CQ86UX6 486 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 HIPK1Q86Z02 1210 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 GRAMD2AQ8IUY3 354 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 CMIPQ8IY22 773 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 HS3ST5Q8IZT8 346 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 PACRGLQ8N7B6 248 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 ADAMTS17Q8TE56 1095 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 PHF10Q8WUB8 498 aaKnown RBP10.31□□□□□ -0.76
USP3-218ENST00000560202 CNOT9Q92600 299 aaKnown RBP10.31□□□□□ -0.76
USP3-218ENST00000560202 SDCCAG3Q96C92 435 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 EPYCQ99645 322 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 PRR14Q9BWN1 585 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 EVA1AQ9H8M9 152 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 ZBTB20Q9HC78 741 aaPredicted RBP10.31□□□□□ -0.76
USP3-218ENST00000560202 C8orf4Q9NR00 106 aa10.31□□□□□ -0.76
USP3-218ENST00000560202 ACER3Q9NUN7 267 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms