RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 SENP8Q96LD8 212 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 NOL4LQ96MY1 436 aaPredicted RBP1.28□□□□□ -2.2
USP3-209ENST00000558925 CCNL2Q96S94 520 aaPredicted RBP1.28□□□□□ -2.2
USP3-209ENST00000558925 ATOH8Q96SQ7 321 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 SLC6A7Q99884 636 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 HCAR1Q9BXC0 346 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 TRIM15Q9C019 465 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 NT5C3AQ9H0P0 336 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 ZBP1Q9H171 429 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 VCX2Q9H322 139 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 AMBNQ9NP70 447 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 TIGARQ9NQ88 270 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 MIEF1Q9NQG6 463 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 SLC17A5Q9NRA2 495 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 UFSP2Q9NUQ7 469 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 PAK1IP1Q9NWT1 392 aaPredicted RBP1.28□□□□□ -2.2
USP3-209ENST00000558925 FAM120CQ9NX05 1096 aaKnown RBP1.28□□□□□ -2.2
USP3-209ENST00000558925 ELOVL2Q9NXB9 296 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 AIPL1Q9NZN9 384 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 RAI14Q9P0K7 980 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 PAK5Q9P286 719 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 CYTH4Q9UIA0 394 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 LCMT1Q9UIC8 334 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 KLK13Q9UKR3 277 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 RNF6Q9Y252 685 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 MOB4Q9Y3A3 225 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 NAALAD2Q9Y3Q0 740 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 MAB21L2Q9Y586 359 aa1.28□□□□□ -2.2
USP3-209ENST00000558925 PTCH1Q13635 1447 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 CARMIL1Q5VZK9 1371 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 GRIN2DO15399 1336 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 IGKV3D-15A0A087WSY6 115 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 SYNJ2BP-COX16A0A087WUM0 186 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 A0A1W2PQ72 361 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 LRP5LA4QPB2 252 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 OR6C65A6NJZ3 312 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 EFCAB7A8K855 629 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 E9PAM4 449 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 G3V3Y1 287 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 BTN3A3O00478 584 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 CDX4O14627 284 aaPredicted RBP1.27□□□□□ -2.21
USP3-209ENST00000558925 LCMT2O60294 686 aaKnown RBP1.27□□□□□ -2.21
USP3-209ENST00000558925 ZNF354AO60765 605 aaPredicted RBP1.27□□□□□ -2.21
USP3-209ENST00000558925 TSC22D2O75157 780 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 SCRG1O75711 98 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 RHBDL1O75783 438 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 NOL4O94818 638 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 SNX4O95219 450 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 ADCY5O95622 1261 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 HPP00738 406 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 SERPINA3P01011 423 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 IGHV3-13P01766 116 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 MMP11P24347 488 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 ATP5A1P25705 553 aaKnown RBP1.27□□□□□ -2.21
USP3-209ENST00000558925 PSMA2P25787 234 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 RDXP35241 583 aaKnown RBP1.27□□□□□ -2.21
USP3-209ENST00000558925 GNPDA1P46926 289 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 P2RY1P47900 373 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 CASP4P49662 377 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 STARP49675 285 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 HSPA2P54652 639 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 HMGCS2P54868 508 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 HMGN5P82970 282 aaKnown RBP1.27□□□□□ -2.21
USP3-209ENST00000558925 IL9RQ01113 521 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 BDH1Q02338 343 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 MAP2K1Q02750 393 aaPredicted RBP1.27□□□□□ -2.21
USP3-209ENST00000558925 PAX2Q02962 417 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 C1orf61Q13536 156 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 RIPK1Q13546 671 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 MXD4Q14582 209 aaPredicted RBP1.27□□□□□ -2.21
USP3-209ENST00000558925 LPAL2Q16609 132 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 PPP1R3AQ16821 1122 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 TPD52L1Q16890 204 aaPredicted RBP1.27□□□□□ -2.21
USP3-209ENST00000558925 RABL6Q3YEC7 729 aaPredicted RBP1.27□□□□□ -2.21
USP3-209ENST00000558925 EIPR1Q53HC9 387 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 ZNF772Q68DY9 489 aaPredicted RBP1.27□□□□□ -2.21
USP3-209ENST00000558925 CCDC80Q76M96 950 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 LRRC70Q7Z2Q7 622 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 CEACAM19Q7Z692 300 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 IFNEQ86WN2 208 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 HIPK1Q86Z02 1210 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 LRRC49Q8IUZ0 686 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 CDH26Q8IXH8 852 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 ZNF683Q8IZ20 524 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 ARL14Q8N4G2 192 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 POM121L12Q8N7R1 296 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 CSNK1G2-AS1Q8NCQ2 148 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 MAPK1IP1LQ8NDC0 245 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 CATSPER1Q8NEC5 780 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 OR5D13Q8NGL4 314 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 OR4D5Q8NGN0 318 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 FAM110BQ8TC76 370 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 RNF139Q8WU17 664 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 TRUB1Q8WWH5 349 aaKnown RBP1.27□□□□□ -2.21
USP3-209ENST00000558925 PIGCQ92535 297 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 BADQ92934 168 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 EMG1Q92979 244 aaKnown RBP1.27□□□□□ -2.21
USP3-209ENST00000558925 PSMG2Q969U7 264 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 MYLPFQ96A32 169 aa1.27□□□□□ -2.21
USP3-209ENST00000558925 CELF6Q96J87 481 aaKnown RBP1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms