RNA–Protein interactions for RNA: ENST00000475540.1

SMC5-203, Transcript of structural maintenance of chromosomes 5, humanhuman

TSL 3

Gene SMC5, Length 688 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC5-203ENST00000475540 APOBEC3BQ9UH17 382 aaKnown RBP4.4□□□□□ -1.71
SMC5-203ENST00000475540 KLHDC2Q9Y2U9 406 aa4.4□□□□□ -1.71
SMC5-203ENST00000475540 KLF2Q9Y5W3 355 aaPredicted RBP4.4□□□□□ -1.71
SMC5-203ENST00000475540 CUX2O14529 1486 aa4.39□□□□□ -1.71
SMC5-203ENST00000475540 A0A0U1RQV5 110 aa4.39□□□□□ -1.71
SMC5-203ENST00000475540 A8MUI8 341 aa4.39□□□□□ -1.71
SMC5-203ENST00000475540 SURF6O75683 361 aaKnown RBP4.39□□□□□ -1.71
SMC5-203ENST00000475540 CALB2P22676 271 aa4.39□□□□□ -1.71
SMC5-203ENST00000475540 PRDX2P32119 198 aa4.39□□□□□ -1.71
SMC5-203ENST00000475540 ATP5OP48047 213 aa4.39□□□□□ -1.71
SMC5-203ENST00000475540 RIPK4P57078 832 aa4.39□□□□□ -1.71
SMC5-203ENST00000475540 UBE2HP62256 183 aa4.39□□□□□ -1.71
SMC5-203ENST00000475540 NME3Q13232 169 aa4.39□□□□□ -1.71
SMC5-203ENST00000475540 KCTD21Q4G0X4 260 aa4.39□□□□□ -1.71
SMC5-203ENST00000475540 AGKQ53H12 422 aa4.39□□□□□ -1.71
SMC5-203ENST00000475540 RUFY3Q7L099 469 aa4.39□□□□□ -1.71
SMC5-203ENST00000475540 ZNF677Q86XU0 584 aa4.39□□□□□ -1.71
SMC5-203ENST00000475540 PHYHIPQ92561 330 aa4.39□□□□□ -1.71
SMC5-203ENST00000475540 TPD52L3Q96J77 140 aa4.39□□□□□ -1.71
SMC5-203ENST00000475540 PLIN2Q99541 437 aa4.39□□□□□ -1.71
SMC5-203ENST00000475540 MRPL13Q9BYD1 178 aaKnown RBP4.39□□□□□ -1.71
SMC5-203ENST00000475540 NLNQ9BYT8 704 aa4.39□□□□□ -1.71
SMC5-203ENST00000475540 GCOM2Q9BZD3 368 aaPredicted RBP4.39□□□□□ -1.71
SMC5-203ENST00000475540 ALG9Q9H6U8 611 aa4.39□□□□□ -1.71
SMC5-203ENST00000475540 BCAP29Q9UHQ4 241 aa4.39□□□□□ -1.71
SMC5-203ENST00000475540 SPACA6W5XKT8 324 aa4.39□□□□□ -1.71
SMC5-203ENST00000475540 SF3B1O75533 1304 aaKnown RBP eCLIP4.39□□□□□ -1.71
SMC5-203ENST00000475540 PTCH1Q13635 1447 aa4.38□□□□□ -1.71
SMC5-203ENST00000475540 H0YC42 278 aa4.38□□□□□ -1.71
SMC5-203ENST00000475540 PDXKO00764 312 aa4.38□□□□□ -1.71
SMC5-203ENST00000475540 RTL8CO15255 209 aa4.38□□□□□ -1.71
SMC5-203ENST00000475540 ADAM12O43184 909 aa4.38□□□□□ -1.71
SMC5-203ENST00000475540 SERF1AO75920 110 aa4.38□□□□□ -1.71
SMC5-203ENST00000475540 AXLP30530 894 aa4.38□□□□□ -1.71
SMC5-203ENST00000475540 CHI3L1P36222 383 aaPredicted RBP4.38□□□□□ -1.71
SMC5-203ENST00000475540 NOP14P78316 857 aaKnown RBP4.38□□□□□ -1.71
SMC5-203ENST00000475540 GBE1Q04446 702 aa4.38□□□□□ -1.71
SMC5-203ENST00000475540 FUT7Q11130 342 aa4.38□□□□□ -1.71
SMC5-203ENST00000475540 IDI1Q13907 227 aa4.38□□□□□ -1.71
SMC5-203ENST00000475540 BTG3Q14201 252 aaPredicted RBP4.38□□□□□ -1.71
SMC5-203ENST00000475540 PMF1Q6P1K2 205 aa4.38□□□□□ -1.71
SMC5-203ENST00000475540 DPY19L2P2Q6ZN68 376 aa4.38□□□□□ -1.71
SMC5-203ENST00000475540 BNIPLQ7Z465 357 aa4.38□□□□□ -1.71
SMC5-203ENST00000475540 DLX4Q92988 240 aaPredicted RBP4.38□□□□□ -1.71
SMC5-203ENST00000475540 DNAJA3Q96EY1 480 aa4.38□□□□□ -1.71
SMC5-203ENST00000475540 SENP8Q96LD8 212 aa4.38□□□□□ -1.71
SMC5-203ENST00000475540 PSKH2Q96QS6 385 aa4.38□□□□□ -1.71
SMC5-203ENST00000475540 SECISBP2Q96T21 854 aaKnown RBP4.38□□□□□ -1.71
SMC5-203ENST00000475540 EDEM2Q9BV94 578 aa4.38□□□□□ -1.71
SMC5-203ENST00000475540 CAPS2Q9BXY5 557 aa4.38□□□□□ -1.71
SMC5-203ENST00000475540 TRPV5Q9NQA5 729 aa4.38□□□□□ -1.71
SMC5-203ENST00000475540 TMEM9Q9P0T7 183 aa4.38□□□□□ -1.71
SMC5-203ENST00000475540 PURGQ9UJV8 347 aaKnown RBP4.38□□□□□ -1.71
SMC5-203ENST00000475540 DHRS7Q9Y394 339 aa4.38□□□□□ -1.71
SMC5-203ENST00000475540 TRBV7-9A0A0J9YWB2 115 aa4.37□□□□□ -1.71
SMC5-203ENST00000475540 ZSCAN5BA6NJL1 495 aa4.37□□□□□ -1.71
SMC5-203ENST00000475540 NPIPA2E9PIF3 369 aa4.37□□□□□ -1.71
SMC5-203ENST00000475540 OR4F21O95013 312 aa4.37□□□□□ -1.71
SMC5-203ENST00000475540 IGSF6O95976 241 aa4.37□□□□□ -1.71
SMC5-203ENST00000475540 UGT2B4P06133 528 aa4.37□□□□□ -1.71
SMC5-203ENST00000475540 CA3P07451 260 aa4.37□□□□□ -1.71
SMC5-203ENST00000475540 IQCF3P0C7M6 154 aa4.37□□□□□ -1.71
SMC5-203ENST00000475540 ZCCHC18P0CG32 403 aa4.37□□□□□ -1.71
SMC5-203ENST00000475540 TAGLN2P37802 199 aaKnown RBP4.37□□□□□ -1.71
SMC5-203ENST00000475540 NAPAP54920 295 aa4.37□□□□□ -1.71
SMC5-203ENST00000475540 ATP5IP56385 69 aaPredicted RBP4.37□□□□□ -1.71
SMC5-203ENST00000475540 NLRP11P59045 1033 aaKnown RBP4.37□□□□□ -1.71
SMC5-203ENST00000475540 TNFRSF17Q02223 184 aa4.37□□□□□ -1.71
SMC5-203ENST00000475540 EIF2B1Q14232 305 aaKnown RBP4.37□□□□□ -1.71
SMC5-203ENST00000475540 MXD4Q14582 209 aaPredicted RBP4.37□□□□□ -1.71
SMC5-203ENST00000475540 TATDN3Q17R31 274 aa4.37□□□□□ -1.71
SMC5-203ENST00000475540 GLYR1Q49A26 553 aaPredicted RBP4.37□□□□□ -1.71
SMC5-203ENST00000475540 VPS36Q86VN1 386 aa4.37□□□□□ -1.71
SMC5-203ENST00000475540 GRAMD2AQ8IUY3 354 aa4.37□□□□□ -1.71
SMC5-203ENST00000475540 CEND1Q8N111 149 aa4.37□□□□□ -1.71
SMC5-203ENST00000475540 C14orf178Q8N769 122 aaPredicted RBP4.37□□□□□ -1.71
SMC5-203ENST00000475540 OR4F17Q8NGA8 305 aa4.37□□□□□ -1.71
SMC5-203ENST00000475540 TMEM45BQ96B21 275 aa4.37□□□□□ -1.71
SMC5-203ENST00000475540 DHTKD1Q96HY7 919 aaPredicted RBP4.37□□□□□ -1.71
SMC5-203ENST00000475540 DEFB118Q96PH6 123 aa4.37□□□□□ -1.71
SMC5-203ENST00000475540 OR4F4Q96R69 305 aa4.37□□□□□ -1.71
SMC5-203ENST00000475540 CCDC77Q9BR77 488 aa4.37□□□□□ -1.71
SMC5-203ENST00000475540 ALG12Q9BV10 488 aa4.37□□□□□ -1.71
SMC5-203ENST00000475540 FAM124BQ9H5Z6 455 aaPredicted RBP4.37□□□□□ -1.71
SMC5-203ENST00000475540 LHX3Q9UBR4 397 aa4.37□□□□□ -1.71
SMC5-203ENST00000475540 CHRNA9Q9UGM1 479 aa4.37□□□□□ -1.71
SMC5-203ENST00000475540 FOXJ3Q9UPW0 622 aa4.37□□□□□ -1.71
SMC5-203ENST00000475540 CA5BQ9Y2D0 317 aa4.37□□□□□ -1.71
SMC5-203ENST00000475540 FLVCR1Q9Y5Y0 555 aa4.37□□□□□ -1.71
SMC5-203ENST00000475540 NPC1L1Q9UHC9 1359 aa4.37□□□□□ -1.71
SMC5-203ENST00000475540 FAM47DPA6NHR8 397 aa4.36□□□□□ -1.71
SMC5-203ENST00000475540 HSPB1P04792 205 aaKnown RBP4.36□□□□□ -1.71
SMC5-203ENST00000475540 PTPN6P29350 595 aa4.36□□□□□ -1.71
SMC5-203ENST00000475540 SGSHP51688 502 aa4.36□□□□□ -1.71
SMC5-203ENST00000475540 TMED1Q13445 227 aa4.36□□□□□ -1.71
SMC5-203ENST00000475540 PDK3Q15120 406 aa4.36□□□□□ -1.71
SMC5-203ENST00000475540 CCDC57Q2TAC2 916 aa4.36□□□□□ -1.71
SMC5-203ENST00000475540 ZNF311Q5JNZ3 666 aa4.36□□□□□ -1.71
SMC5-203ENST00000475540 LGSNQ5TDP6 509 aa4.36□□□□□ -1.71
SMC5-203ENST00000475540 MEDAGQ5VYS4 303 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms