RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 SYNGR4O95473 234 aa14.39□□□□□ -0.11
COL7A1-204ENST00000462475 SHBGP04278 402 aa14.39□□□□□ -0.11
COL7A1-204ENST00000462475 PPP3CBP16298 524 aa14.39□□□□□ -0.11
COL7A1-204ENST00000462475 IL11P20809 199 aa14.39□□□□□ -0.11
COL7A1-204ENST00000462475 ZNF41P51814 821 aaPredicted RBP14.39□□□□□ -0.11
COL7A1-204ENST00000462475 MANFP55145 182 aaKnown RBP14.39□□□□□ -0.11
COL7A1-204ENST00000462475 RAC1P63000 192 aa14.39□□□□□ -0.11
COL7A1-204ENST00000462475 CD226Q15762 336 aa14.39□□□□□ -0.11
COL7A1-204ENST00000462475 CCNJQ5T5M9 372 aa14.39□□□□□ -0.11
COL7A1-204ENST00000462475 PLEKHM3Q6ZWE6 761 aa14.39□□□□□ -0.11
COL7A1-204ENST00000462475 WFDC8Q8IUA0 241 aa14.39□□□□□ -0.11
COL7A1-204ENST00000462475 CCDC63Q8NA47 563 aa14.39□□□□□ -0.11
COL7A1-204ENST00000462475 CEP70Q8NHQ1 597 aa14.39□□□□□ -0.11
COL7A1-204ENST00000462475 RHOXF2Q9BQY4 288 aa14.39□□□□□ -0.11
COL7A1-204ENST00000462475 ACTR6Q9GZN1 396 aa14.39□□□□□ -0.11
COL7A1-204ENST00000462475 TUBB1Q9H4B7 451 aa14.39□□□□□ -0.11
COL7A1-204ENST00000462475 PAQR5Q9NXK6 330 aaPredicted RBP14.39□□□□□ -0.11
COL7A1-204ENST00000462475 SH3BP4Q9P0V3 963 aa14.39□□□□□ -0.11
COL7A1-204ENST00000462475 BAIAP2L1Q9UHR4 511 aa14.39□□□□□ -0.11
COL7A1-204ENST00000462475 CSPG4Q6UVK1 2322 aa14.39□□□□□ -0.11
COL7A1-204ENST00000462475 ANK3Q12955 4377 aaKnown RBP14.38□□□□□ -0.11
COL7A1-204ENST00000462475 SMIM23A6NLE4 172 aa14.38□□□□□ -0.11
COL7A1-204ENST00000462475 AZIN1O14977 448 aa14.38□□□□□ -0.11
COL7A1-204ENST00000462475 CNOT4O95628 575 aaKnown RBP14.38□□□□□ -0.11
COL7A1-204ENST00000462475 CPA3P15088 417 aa14.38□□□□□ -0.11
COL7A1-204ENST00000462475 SHC1P29353 583 aa14.38□□□□□ -0.11
COL7A1-204ENST00000462475 AGTR1P30556 359 aa14.38□□□□□ -0.11
COL7A1-204ENST00000462475 CRHR1P34998 444 aa14.38□□□□□ -0.11
COL7A1-204ENST00000462475 PRIM2P49643 509 aa14.38□□□□□ -0.11
COL7A1-204ENST00000462475 ZNF844Q08AG5 666 aa14.38□□□□□ -0.11
COL7A1-204ENST00000462475 RFTN2Q52LD8 501 aaPredicted RBP14.38□□□□□ -0.11
COL7A1-204ENST00000462475 EXOSC6Q5RKV6 272 aaKnown RBP14.38□□□□□ -0.11
COL7A1-204ENST00000462475 CPTPQ5TA50 214 aa14.38□□□□□ -0.11
COL7A1-204ENST00000462475 LIPMQ5VYY2 423 aa14.38□□□□□ -0.11
COL7A1-204ENST00000462475 HBMQ6B0K9 141 aa14.38□□□□□ -0.11
COL7A1-204ENST00000462475 ESPNLQ6ZVH7 1005 aa14.38□□□□□ -0.11
COL7A1-204ENST00000462475 CEP112Q8N8E3 955 aa14.38□□□□□ -0.11
COL7A1-204ENST00000462475 COX18Q8N8Q8 333 aa14.38□□□□□ -0.11
COL7A1-204ENST00000462475 OR6Y1Q8NGX8 325 aa14.38□□□□□ -0.11
COL7A1-204ENST00000462475 ACTRT2Q8TDY3 377 aa14.38□□□□□ -0.11
COL7A1-204ENST00000462475 JADE3Q92613 823 aa14.38□□□□□ -0.11
COL7A1-204ENST00000462475 PLPPR2Q96GM1 343 aa14.38□□□□□ -0.11
COL7A1-204ENST00000462475 C12orf49Q9H741 205 aa14.38□□□□□ -0.11
COL7A1-204ENST00000462475 SIRT3Q9NTG7 399 aaPredicted RBP14.38□□□□□ -0.11
COL7A1-204ENST00000462475 ACSS1Q9NUB1 689 aaPredicted RBP14.38□□□□□ -0.11
COL7A1-204ENST00000462475 DSCAMO60469 2012 aa14.37□□□□□ -0.11
COL7A1-204ENST00000462475 KIAA1324LA8MWY0 1029 aaPredicted RBP14.37□□□□□ -0.11
COL7A1-204ENST00000462475 INAFM1C9JVW0 142 aa14.37□□□□□ -0.11
COL7A1-204ENST00000462475 SCDO00767 359 aa14.37□□□□□ -0.11
COL7A1-204ENST00000462475 LSM1O15116 133 aaKnown RBP14.37□□□□□ -0.11
COL7A1-204ENST00000462475 ALOX5P09917 674 aa14.37□□□□□ -0.11
COL7A1-204ENST00000462475 LINGO3P0C6S8 592 aa14.37□□□□□ -0.11
COL7A1-204ENST00000462475 LINC00032P0C843 101 aa14.37□□□□□ -0.11
COL7A1-204ENST00000462475 NEFHP12036 1026 aa14.37□□□□□ -0.11
COL7A1-204ENST00000462475 ME2P23368 584 aa14.37□□□□□ -0.11
COL7A1-204ENST00000462475 CCT5P48643 541 aa14.37□□□□□ -0.11
COL7A1-204ENST00000462475 RNF144AP50876 292 aaPredicted RBP14.37□□□□□ -0.11
COL7A1-204ENST00000462475 NR1H2P55055 460 aa14.37□□□□□ -0.11
COL7A1-204ENST00000462475 FOXF1Q12946 379 aa14.37□□□□□ -0.11
COL7A1-204ENST00000462475 BEND4Q6ZU67 534 aa14.37□□□□□ -0.11
COL7A1-204ENST00000462475 MISPQ8IVT2 679 aa14.37□□□□□ -0.11
COL7A1-204ENST00000462475 C10orf107Q8IVU9 208 aa14.37□□□□□ -0.11
COL7A1-204ENST00000462475 CNPY4Q8N129 248 aa14.37□□□□□ -0.11
COL7A1-204ENST00000462475 TMEM171Q8WVE6 324 aa14.37□□□□□ -0.11
COL7A1-204ENST00000462475 FAM120BQ96EK7 910 aaKnown RBP14.37□□□□□ -0.11
COL7A1-204ENST00000462475 KLHL15Q96M94 604 aa14.37□□□□□ -0.11
COL7A1-204ENST00000462475 TMEM204Q9BSN7 226 aa14.37□□□□□ -0.11
COL7A1-204ENST00000462475 GATA5Q9BWX5 397 aaPredicted RBP14.37□□□□□ -0.11
COL7A1-204ENST00000462475 IQCGQ9H095 443 aaKnown RBP14.37□□□□□ -0.11
COL7A1-204ENST00000462475 HHATLQ9HCP6 504 aa14.37□□□□□ -0.11
COL7A1-204ENST00000462475 UBQLN4Q9NRR5 601 aa14.37□□□□□ -0.11
COL7A1-204ENST00000462475 GLRX2Q9NS18 164 aa14.37□□□□□ -0.11
COL7A1-204ENST00000462475 HIVEP2P31629 2446 aa14.37□□□□□ -0.11
COL7A1-204ENST00000462475 USF3Q68DE3 2245 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 A0A1W2PQD3 144 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 TMEM233B4DJY2 109 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 COPEO14579 308 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 HS3ST1O14792 307 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 OIP5O43482 229 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 TUBBP07437 444 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 NID1P14543 1247 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 HPGDP15428 266 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 PAX1P15863 534 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 PSMB1P20618 241 aaKnown RBP14.36□□□□□ -0.11
COL7A1-204ENST00000462475 LCN1P31025 176 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 SFTPDP35247 375 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 ZNF117Q03924 483 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 PCLAFQ15004 111 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 ZNF239Q16600 458 aaKnown RBP14.36□□□□□ -0.11
COL7A1-204ENST00000462475 GALNTL6Q49A17 601 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 KANK2Q63ZY3 851 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 ALKBH2Q6NS38 261 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 RNF165Q6ZSG1 346 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 STK32CQ86UX6 486 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 LILRA2Q8N149 483 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 C4orf33Q8N1A6 199 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 B4GALNT2Q8NHY0 566 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 RNF128Q8TEB7 428 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 ABHD3Q8WU67 409 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 ROBO4Q8WZ75 1007 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms