RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 SLC18A1P54219 525 aa19.13■□□□□ 0.65
HMGB3-205ENST00000455596 TPD52P55327 224 aaPredicted RBP19.13■□□□□ 0.65
HMGB3-205ENST00000455596 CLDN20P56880 219 aa19.13■□□□□ 0.65
HMGB3-205ENST00000455596 SORDQ00796 357 aa19.13■□□□□ 0.65
HMGB3-205ENST00000455596 CD226Q15762 336 aa19.13■□□□□ 0.65
HMGB3-205ENST00000455596 BEND6Q5SZJ8 279 aaPredicted RBP19.13■□□□□ 0.65
HMGB3-205ENST00000455596 MTERF4Q7Z6M4 381 aaKnown RBP19.13■□□□□ 0.65
HMGB3-205ENST00000455596 LUZP2Q86TE4 346 aa19.13■□□□□ 0.65
HMGB3-205ENST00000455596 OR4A15Q8NGL6 344 aa19.13■□□□□ 0.65
HMGB3-205ENST00000455596 B4GALNT2Q8NHY0 566 aa19.13■□□□□ 0.65
HMGB3-205ENST00000455596 MGARPQ8TDB4 240 aa19.13■□□□□ 0.65
HMGB3-205ENST00000455596 FAM222BQ8WU58 562 aa19.13■□□□□ 0.65
HMGB3-205ENST00000455596 ZBTB8AQ96BR9 441 aa19.13■□□□□ 0.65
HMGB3-205ENST00000455596 TESCQ96BS2 214 aa19.13■□□□□ 0.65
HMGB3-205ENST00000455596 SH3YL1Q96HL8 342 aaPredicted RBP19.13■□□□□ 0.65
HMGB3-205ENST00000455596 RBM24Q9BX46 236 aaKnown RBP19.13■□□□□ 0.65
HMGB3-205ENST00000455596 THAP1Q9NVV9 213 aa19.13■□□□□ 0.65
HMGB3-205ENST00000455596 KCNE3Q9Y6H6 103 aa19.13■□□□□ 0.65
HMGB3-205ENST00000455596 TUBAL3A6NHL2 446 aa19.12■□□□□ 0.65
HMGB3-205ENST00000455596 MATN1P21941 496 aa19.12■□□□□ 0.65
HMGB3-205ENST00000455596 CPA2P48052 419 aa19.12■□□□□ 0.65
HMGB3-205ENST00000455596 CLNS1AP54105 237 aaKnown RBP19.12■□□□□ 0.65
HMGB3-205ENST00000455596 MAGOHP61326 146 aaKnown RBP19.12■□□□□ 0.65
HMGB3-205ENST00000455596 OCRLQ01968 901 aa19.12■□□□□ 0.65
HMGB3-205ENST00000455596 DPY19L1Q2PZI1 675 aa19.12■□□□□ 0.65
HMGB3-205ENST00000455596 ANXA8L1Q5VT79 327 aa19.12■□□□□ 0.65
HMGB3-205ENST00000455596 OGFOD2Q6N063 350 aa19.12■□□□□ 0.65
HMGB3-205ENST00000455596 C6orf120Q7Z4R8 191 aa19.12■□□□□ 0.65
HMGB3-205ENST00000455596 METTL25Q8N6Q8 603 aa19.12■□□□□ 0.65
HMGB3-205ENST00000455596 VPS37AQ8NEZ2 397 aa19.12■□□□□ 0.65
HMGB3-205ENST00000455596 OR5D16Q8NGK9 328 aa19.12■□□□□ 0.65
HMGB3-205ENST00000455596 PHOSPHO1Q8TCT1 267 aa19.12■□□□□ 0.65
HMGB3-205ENST00000455596 SLC35G5Q96KT7 338 aa19.12■□□□□ 0.65
HMGB3-205ENST00000455596 TMBIM4Q9HC24 238 aa19.12■□□□□ 0.65
HMGB3-205ENST00000455596 MED17Q9NVC6 651 aa19.12■□□□□ 0.65
HMGB3-205ENST00000455596 NKIRAS1Q9NYS0 192 aa19.12■□□□□ 0.65
HMGB3-205ENST00000455596 PACSIN3Q9UKS6 424 aa19.12■□□□□ 0.65
HMGB3-205ENST00000455596 TNFSF12-TNFSF13A0A0A6YY99 330 aa19.11■□□□□ 0.65
HMGB3-205ENST00000455596 NPIPA5A0A0B4J1W7 369 aa19.11■□□□□ 0.65
HMGB3-205ENST00000455596 RNF103-CHMP3A0A140T963 221 aa19.11■□□□□ 0.65
HMGB3-205ENST00000455596 A0A1W2PNV4 684 aa19.11■□□□□ 0.65
HMGB3-205ENST00000455596 C7orf72A4D263 438 aa19.11■□□□□ 0.65
HMGB3-205ENST00000455596 DUXAA6NLW8 204 aa19.11■□□□□ 0.65
HMGB3-205ENST00000455596 NPIPA7E9PJI5 369 aa19.11■□□□□ 0.65
HMGB3-205ENST00000455596 H3BNH8 94 aa19.11■□□□□ 0.65
HMGB3-205ENST00000455596 ANKRD28O15084 1053 aa19.11■□□□□ 0.65
HMGB3-205ENST00000455596 CTAG2O75638 210 aa19.11■□□□□ 0.65
HMGB3-205ENST00000455596 TNFSF13O75888 250 aa19.11■□□□□ 0.65
HMGB3-205ENST00000455596 NPIPA8P0DM63 369 aa19.11■□□□□ 0.65
HMGB3-205ENST00000455596 ATP12AP54707 1039 aa19.11■□□□□ 0.65
HMGB3-205ENST00000455596 PON3Q15166 354 aa19.11■□□□□ 0.65
HMGB3-205ENST00000455596 SGCBQ16585 318 aa19.11■□□□□ 0.65
HMGB3-205ENST00000455596 PLPPR5Q32ZL2 321 aa19.11■□□□□ 0.65
HMGB3-205ENST00000455596 KLHL26Q53HC5 615 aa19.11■□□□□ 0.65
HMGB3-205ENST00000455596 ATG16L1Q676U5 607 aa19.11■□□□□ 0.65
HMGB3-205ENST00000455596 GGNQ86UU5 652 aa19.11■□□□□ 0.65
HMGB3-205ENST00000455596 WDR75Q8IWA0 830 aaKnown RBP19.11■□□□□ 0.65
HMGB3-205ENST00000455596 GTPBP8Q8N3Z3 284 aaPredicted RBP19.11■□□□□ 0.65
HMGB3-205ENST00000455596 RAB3IL1Q8TBN0 382 aa19.11■□□□□ 0.65
HMGB3-205ENST00000455596 FIG4Q92562 907 aa19.11■□□□□ 0.65
HMGB3-205ENST00000455596 DNAJB12Q9NXW2 375 aaKnown RBP19.11■□□□□ 0.65
HMGB3-205ENST00000455596 GALNT8Q9NY28 637 aa19.11■□□□□ 0.65
HMGB3-205ENST00000455596 ZNF175Q9Y473 711 aa19.11■□□□□ 0.65
HMGB3-205ENST00000455596 HEATR5AQ86XA9 2040 aa19.11■□□□□ 0.65
HMGB3-205ENST00000455596 PRSS51A0A1B0GVH4 220 aa19.1■□□□□ 0.65
HMGB3-205ENST00000455596 TRPC5OSA6NMA1 111 aa19.1■□□□□ 0.65
HMGB3-205ENST00000455596 SDHDO14521 159 aa19.1■□□□□ 0.65
HMGB3-205ENST00000455596 EIF1AYO14602 144 aaKnown RBP19.1■□□□□ 0.65
HMGB3-205ENST00000455596 SCN2BO60939 215 aa19.1■□□□□ 0.65
HMGB3-205ENST00000455596 SNNO75324 88 aaPredicted RBP19.1■□□□□ 0.65
HMGB3-205ENST00000455596 RPS26P62854 115 aaKnown RBP19.1■□□□□ 0.65
HMGB3-205ENST00000455596 ZNF117Q03924 483 aa19.1■□□□□ 0.65
HMGB3-205ENST00000455596 ANKRD46Q86W74 232 aa19.1■□□□□ 0.65
HMGB3-205ENST00000455596 CLEC4FQ8N1N0 589 aa19.1■□□□□ 0.65
HMGB3-205ENST00000455596 CNEP1R1Q8N9A8 125 aa19.1■□□□□ 0.65
HMGB3-205ENST00000455596 TLCD1Q96CP7 247 aa19.1■□□□□ 0.65
HMGB3-205ENST00000455596 ZNF845Q96IR2 970 aaPredicted RBP19.1■□□□□ 0.65
HMGB3-205ENST00000455596 RNF145Q96MT1 663 aa19.1■□□□□ 0.65
HMGB3-205ENST00000455596 SDF2Q99470 211 aa19.1■□□□□ 0.65
HMGB3-205ENST00000455596 GPATCH1Q9BRR8 931 aaKnown RBP19.1■□□□□ 0.65
HMGB3-205ENST00000455596 POLDIP3Q9BY77 421 aaKnown RBP19.1■□□□□ 0.65
HMGB3-205ENST00000455596 ANKRD17O75179 2603 aaKnown RBP19.1■□□□□ 0.65
HMGB3-205ENST00000455596 A6NNC1 897 aa19.09■□□□□ 0.65
HMGB3-205ENST00000455596 A8MXE2 369 aa19.09■□□□□ 0.65
HMGB3-205ENST00000455596 E9PBE3 544 aa19.09■□□□□ 0.65
HMGB3-205ENST00000455596 HDAC3O15379 428 aa19.09■□□□□ 0.65
HMGB3-205ENST00000455596 CPSF4O95639 269 aaKnown RBP19.09■□□□□ 0.65
HMGB3-205ENST00000455596 AK1P00568 194 aa19.09■□□□□ 0.65
HMGB3-205ENST00000455596 FCGR2AP12318 317 aa19.09■□□□□ 0.65
HMGB3-205ENST00000455596 UQCRC2P22695 453 aa19.09■□□□□ 0.65
HMGB3-205ENST00000455596 S100A3P33764 101 aa19.09■□□□□ 0.65
HMGB3-205ENST00000455596 P2RX1P51575 399 aa19.09■□□□□ 0.65
HMGB3-205ENST00000455596 PHC1P78364 1004 aa19.09■□□□□ 0.65
HMGB3-205ENST00000455596 SPANXN4Q5MJ08 99 aa19.09■□□□□ 0.65
HMGB3-205ENST00000455596 SPATA19Q7Z5L4 167 aa19.09■□□□□ 0.65
HMGB3-205ENST00000455596 ZNF614Q8N883 585 aa19.09■□□□□ 0.65
HMGB3-205ENST00000455596 CHDHQ8NE62 594 aaPredicted RBP19.09■□□□□ 0.65
HMGB3-205ENST00000455596 FNDC9Q8TBE3 224 aa19.09■□□□□ 0.65
HMGB3-205ENST00000455596 NPAS1Q99742 590 aa19.09■□□□□ 0.65
HMGB3-205ENST00000455596 SERHL2Q9H4I8 314 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms