RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 ACOT11Q8WXI4 607 aaPredicted RBP13.14□□□□□ -0.31
USP39-207ENST00000450066 ZNF559Q9BR84 538 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 REV1Q9UBZ9 1251 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 GPN3Q9UHW5 284 aaPredicted RBP13.14□□□□□ -0.31
USP39-207ENST00000450066 LOXL2Q9Y4K0 774 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 PCDHGA6Q9Y5G7 932 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 SERINC4A6NH21 518 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 LRP3O75074 770 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 OSMP13725 252 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 ATP6V1B1P15313 513 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 MMP11P24347 488 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 TUBA4AP68366 448 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 CDK5R2Q13319 367 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 OR1Q1Q15612 314 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 CDCP2Q5VXM1 449 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 ZNF730Q6ZMV8 503 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 CPEB2Q7Z5Q1 589 aaKnown RBP13.14□□□□□ -0.31
USP39-207ENST00000450066 APCDD1LQ8NCL9 501 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 MR1Q95460 341 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 HSPBAP1Q96EW2 488 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 ZPBPQ9BS86 351 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 TUBA8Q9NY65 449 aaPredicted RBP13.14□□□□□ -0.31
USP39-207ENST00000450066 C19orf25Q9UFG5 118 aaPredicted RBP13.14□□□□□ -0.31
USP39-207ENST00000450066 SLC7A7Q9UM01 511 aa13.14□□□□□ -0.31
USP39-207ENST00000450066 TFAP2AP05549 437 aa13.13□□□□□ -0.31
USP39-207ENST00000450066 ITIH1P19827 911 aa13.13□□□□□ -0.31
USP39-207ENST00000450066 CHMP24386 653 aa13.13□□□□□ -0.31
USP39-207ENST00000450066 ADH7P40394 386 aa13.13□□□□□ -0.31
USP39-207ENST00000450066 RPL5P46777 297 aaKnown RBP13.13□□□□□ -0.31
USP39-207ENST00000450066 NR0B1P51843 470 aaKnown RBP13.13□□□□□ -0.31
USP39-207ENST00000450066 CRISP1P54107 249 aa13.13□□□□□ -0.31
USP39-207ENST00000450066 PTGES3Q15185 160 aaKnown RBP13.13□□□□□ -0.31
USP39-207ENST00000450066 ISXQ2M1V0 245 aa13.13□□□□□ -0.31
USP39-207ENST00000450066 LAIR2Q6ISS4 152 aa13.13□□□□□ -0.31
USP39-207ENST00000450066 FAM199XQ6PEV8 388 aaPredicted RBP13.13□□□□□ -0.31
USP39-207ENST00000450066 ZNF613Q6PF04 617 aa13.13□□□□□ -0.31
USP39-207ENST00000450066 Q6ZPB1 254 aaPredicted RBP13.13□□□□□ -0.31
USP39-207ENST00000450066 RRM2BQ7LG56 351 aa13.13□□□□□ -0.31
USP39-207ENST00000450066 ZNF550Q7Z398 422 aa13.13□□□□□ -0.31
USP39-207ENST00000450066 SLCO6A1Q86UG4 719 aa13.13□□□□□ -0.31
USP39-207ENST00000450066 NKAIN4Q8IVV8 208 aa13.13□□□□□ -0.31
USP39-207ENST00000450066 LPAR4Q99677 370 aa13.13□□□□□ -0.31
USP39-207ENST00000450066 WDR77Q9BQA1 342 aaPredicted RBP13.13□□□□□ -0.31
USP39-207ENST00000450066 MESP1Q9BRJ9 268 aa13.13□□□□□ -0.31
USP39-207ENST00000450066 NRSN2Q9GZP1 204 aa13.13□□□□□ -0.31
USP39-207ENST00000450066 ADNPQ9H2P0 1102 aa13.13□□□□□ -0.31
USP39-207ENST00000450066 SLC35A3Q9Y2D2 325 aa13.13□□□□□ -0.31
USP39-207ENST00000450066 PCDHGA1Q9Y5H4 931 aa13.13□□□□□ -0.31
USP39-207ENST00000450066 A0A087WXM4 84 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 TRIM64CA6NLI5 447 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 C9J4A7 227 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 ABCB7O75027 752 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 UTS2O95399 124 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 GSTM3P21266 225 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 CRHBPP24387 322 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 ACAA2P42765 397 aaKnown RBP13.12□□□□□ -0.31
USP39-207ENST00000450066 HLCSP50747 726 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 RNF4P78317 190 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 LSM11P83369 360 aaKnown RBP eCLIP13.12□□□□□ -0.31
USP39-207ENST00000450066 TCF15Q12870 199 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 TOP3AQ13472 1001 aaPredicted RBP13.12□□□□□ -0.31
USP39-207ENST00000450066 MAD2L1BPQ15013 274 aaPredicted RBP13.12□□□□□ -0.31
USP39-207ENST00000450066 PAPD4Q6PIY7 484 aaKnown RBP13.12□□□□□ -0.31
USP39-207ENST00000450066 FAM198BQ6UWH4 519 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 HSDL2Q6YN16 418 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 RAB11FIP2Q7L804 512 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 APLFQ8IW19 511 aaPredicted RBP13.12□□□□□ -0.31
USP39-207ENST00000450066 SLC34A3Q8N130 599 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 ZNF566Q969W8 418 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 TP53INP1Q96A56 240 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 LIN37Q96GY3 246 aaPredicted RBP13.12□□□□□ -0.31
USP39-207ENST00000450066 ADOQ96SZ5 270 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 TRIM2Q9C040 744 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 TMEM27Q9HBJ8 222 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 B3GALT1Q9Y5Z6 326 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 CDC14CA4D256 554 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 ZAR1LA6NP61 321 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 CSTAP01040 98 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 HPGDP15428 266 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 TBXA2RP21731 343 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 KRT20P35900 424 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 CDH15P55291 814 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 CXCR4P61073 352 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 ALDH6A1Q02252 535 aaKnown RBP13.12□□□□□ -0.31
USP39-207ENST00000450066 MBOAT2Q6ZWT7 520 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 LSMEM1Q8N8F7 131 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 CNIH3Q8TBE1 160 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 PIGXQ8TBF5 258 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 GNPDA2Q8TDQ7 276 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 VMP1Q96GC9 406 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 GPA33Q99795 319 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 PRSS27Q9BQR3 290 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 ZNF223Q9UK11 482 aaPredicted RBP13.12□□□□□ -0.31
USP39-207ENST00000450066 BLOC1S6Q9UL45 172 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 OTOGLQ3ZCN5 2332 aa13.12□□□□□ -0.31
USP39-207ENST00000450066 SCDO00767 359 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 TSPAN2O60636 221 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 ADAM11O75078 769 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 REM1O75628 298 aa13.11□□□□□ -0.31
USP39-207ENST00000450066 LYPD3O95274 346 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms