RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 FKBP14Q9NWM8 211 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 TAS2R7Q9NYW3 318 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 KCND3Q9UK17 655 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 NOX1Q9Y5S8 564 aa7.79□□□□□ -1.16
CD44-208ENST00000428726 MYL12BO14950 172 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 MPZL2O60487 215 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 RAD1O60671 282 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 KCNJ13O60928 360 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 UPK1BO75841 260 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 IGHV4-34P06331 123 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 IFI30P13284 250 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 OSMP13725 252 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 DRD2P14416 443 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 GABRB1P18505 474 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 TBXA2RP21731 343 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 ACVR1BP36896 505 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 NAA10P41227 235 aaPredicted RBP7.78□□□□□ -1.16
CD44-208ENST00000428726 PPP5CP53041 499 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 PRR5P85299 388 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 CD83Q01151 205 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 BNC1Q01954 994 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 PUS10Q3MIT2 529 aaKnown RBP7.78□□□□□ -1.16
CD44-208ENST00000428726 TMEM35AQ53FP2 167 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 LRRC25Q8N386 305 aaPredicted RBP7.78□□□□□ -1.16
CD44-208ENST00000428726 RFLNBQ8N5W9 214 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 ZNF655Q8N720 491 aaPredicted RBP7.78□□□□□ -1.16
CD44-208ENST00000428726 ATP6V1C2Q8NEY4 427 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 TRNT1Q96Q11 434 aaKnown RBP7.78□□□□□ -1.16
CD44-208ENST00000428726 ELF4Q99607 663 aaPredicted RBP7.78□□□□□ -1.16
CD44-208ENST00000428726 GAL3ST1Q99999 423 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 ASPNQ9BXN1 380 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 ZSCAN32Q9NX65 697 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 MUTYHQ9UIF7 546 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 ZBTB32Q9Y2Y4 487 aaPredicted RBP7.78□□□□□ -1.16
CD44-208ENST00000428726 A0A0B4J203 849 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 A0A1B0GVT2 93 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 AGAP5A6NIR3 686 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 SMLR1H3BR10 107 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 TGFBR3LH3BV60 316 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 H7C1C5 153 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 B3GALT2O43825 422 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 EMDP50402 254 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 LCN6P62502 163 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 STX4Q12846 297 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 SPHARQ15513 63 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 SYT14P1Q58G82 188 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 THSD4Q6ZMP0 1018 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 KLBQ86Z14 1044 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 LINC00471Q8N535 108 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 OR4Q3Q8NH05 313 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 APOBEC4Q8WW27 367 aaKnown RBP7.78□□□□□ -1.16
CD44-208ENST00000428726 RNFT2Q96EX2 444 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 TSSK2Q96PF2 358 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 OR8D2Q9GZM6 311 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 SPRTNQ9H040 489 aaPredicted RBP7.78□□□□□ -1.16
CD44-208ENST00000428726 C3orf14Q9HBI5 128 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 NEK6Q9HC98 313 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 LRIT1Q9P2V4 623 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 CES1P1Q9UKY3 287 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 DAPP1Q9UN19 280 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 ADAM18Q9Y3Q7 739 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 MGAQ8IWI9 3026 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 ZAR1LA6NP61 321 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 EMC8O43402 210 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 PRICKLE3O43900 615 aaPredicted RBP7.78□□□□□ -1.16
CD44-208ENST00000428726 GPANK1O95872 356 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 SDC2P34741 201 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 KHKP50053 298 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 SNRPD2P62316 118 aaKnown RBP7.78□□□□□ -1.16
CD44-208ENST00000428726 SLC3A1Q07837 685 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 EIF2B5Q13144 721 aaKnown RBP7.78□□□□□ -1.16
CD44-208ENST00000428726 HNRNPA0Q13151 305 aaKnown RBP7.78□□□□□ -1.16
CD44-208ENST00000428726 SPANXN2Q5MJ10 180 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 ARMC6Q6NXE6 501 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 PAMR1Q6UXH9 720 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 ZNF836Q6ZNA1 936 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 TTLL10Q6ZVT0 673 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 GDF7Q7Z4P5 450 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 PAQR7Q86WK9 346 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.78□□□□□ -1.16
CD44-208ENST00000428726 OR10H4Q8NGA5 316 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 ZDHHC1Q8WTX9 485 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 ZNF681Q96N22 645 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 OPALINQ96PE5 141 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 DEPDC7Q96QD5 511 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 FYTTD1Q96QD9 318 aaKnown RBP7.78□□□□□ -1.16
CD44-208ENST00000428726 C1QTNF7Q9BXJ2 289 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 BARHL1Q9BZE3 327 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 HHATLQ9HCP6 504 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 KLHL1Q9NR64 748 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 SNX7Q9UNH6 387 aa7.78□□□□□ -1.16
CD44-208ENST00000428726 SH3D21A4FU49 640 aa7.77□□□□□ -1.17
CD44-208ENST00000428726 MASP2O00187 686 aa7.77□□□□□ -1.17
CD44-208ENST00000428726 CHST10O43529 356 aa7.77□□□□□ -1.17
CD44-208ENST00000428726 ADAP00813 363 aa7.77□□□□□ -1.17
CD44-208ENST00000428726 TP53P04637 393 aaPredicted RBP7.77□□□□□ -1.17
CD44-208ENST00000428726 RPLP0P05388 317 aaKnown RBP7.77□□□□□ -1.17
CD44-208ENST00000428726 KRT8P05787 483 aa7.77□□□□□ -1.17
CD44-208ENST00000428726 TSPAN19P0C672 248 aa7.77□□□□□ -1.17
CD44-208ENST00000428726 POU3F3P20264 500 aaPredicted RBP7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms