RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 RPS4Y1P22090 263 aaKnown RBP13.06□□□□□ -0.32
SKA1-202ENST00000398452 OC90Q02509 493 aaPredicted RBP13.06□□□□□ -0.32
SKA1-202ENST00000398452 GRAMD1BQ3KR37 738 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 ACER2Q5QJU3 275 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 MRPL2Q5T653 305 aaKnown RBP13.06□□□□□ -0.32
SKA1-202ENST00000398452 FCRLBQ6BAA4 426 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 IL20RBQ6UXL0 311 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 DEF8Q6ZN54 512 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 ZNF836Q6ZNA1 936 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 C16orf47Q6ZP98 133 aaPredicted RBP13.06□□□□□ -0.32
SKA1-202ENST00000398452 MISPQ8IVT2 679 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 GPALPP1Q8IXQ4 340 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 ZNF440Q8IYI8 595 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 GALNT16Q8N428 558 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 PHOSPHO1Q8TCT1 267 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 NR4A3Q92570 626 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 SDCCAG3Q96C92 435 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 METTL7AQ9H8H3 244 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 RNPEPL1Q9HAU8 725 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 IL1RAPQ9NPH3 570 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 STMN3Q9NZ72 180 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 C6orf203Q9P0P8 240 aaPredicted RBP13.06□□□□□ -0.32
SKA1-202ENST00000398452 STX18Q9P2W9 335 aaKnown RBP13.06□□□□□ -0.32
SKA1-202ENST00000398452 ABCG2Q9UNQ0 655 aa13.06□□□□□ -0.32
SKA1-202ENST00000398452 A0A1W2PQD3 144 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 hCG_2039718K7EN88 272 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 UGT2B11O75310 529 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 E2F6O75461 281 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 ZIC2O95409 532 aaPredicted RBP13.05□□□□□ -0.32
SKA1-202ENST00000398452 NADKO95544 446 aaPredicted RBP13.05□□□□□ -0.32
SKA1-202ENST00000398452 OXSR1O95747 527 aaPredicted RBP13.05□□□□□ -0.32
SKA1-202ENST00000398452 LGI1O95970 557 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 NGFRP08138 427 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 FBXO45P0C2W1 286 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 UBL4AP11441 157 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 ANPEPP15144 967 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 EVI2BP34910 448 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 SOX3P41225 446 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 OR1E2P47887 323 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 FBXW4P57775 412 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 SESN3P58005 492 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 COPZ1P61923 177 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 CXADRP78310 365 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 FGFBP1Q14512 234 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 SNCBQ16143 134 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 DEFB109BQ30KR1 87 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 GLIPR1L2Q4G1C9 344 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 ATP1A1-AS1Q5TC04 95 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 AGAP7PQ5VUJ5 663 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 AP1ARQ63HQ0 302 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 ZAR1Q86SH2 424 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 PQLC1Q8N2U9 271 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 TMCO5AQ8N6Q1 288 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 FAM86B1Q8N7N1 296 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 PAPD5Q8NDF8 572 aaKnown RBP13.05□□□□□ -0.32
SKA1-202ENST00000398452 ZG16BQ96DA0 208 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 SGCZQ96LD1 299 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 AGAP4Q96P64 663 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 TMUB1Q9BVT8 246 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 ING2Q9H160 280 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 VCX3BQ9H321 246 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 SELENONQ9NZV5 590 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 STOML1Q9UBI4 398 aa13.05□□□□□ -0.32
SKA1-202ENST00000398452 PRAMEF25A6NGN4 478 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 TMEM200CA6NKL6 621 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 A6NL46 340 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 ALG1L2C9J202 215 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 MASP2O00187 686 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 CDK2AP1O14519 115 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 ADAMDEC1O15204 470 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 EFSO43281 561 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 SCO2O43819 266 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 RHCEP18577 417 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 CYB561P49447 251 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 CCR4P51679 360 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 SMIM11AP58511 58 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 EEF1A1P68104 462 aaKnown RBP13.04□□□□□ -0.32
SKA1-202ENST00000398452 SLC34A1Q06495 639 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 Q0VFX4 171 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 SRSF6Q13247 344 aaKnown RBP13.04□□□□□ -0.32
SKA1-202ENST00000398452 MAPK14Q16539 360 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 NTRK2Q16620 822 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 H3F3CQ6NXT2 135 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 RTL4Q6ZR62 310 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 PIWIL3Q7Z3Z3 882 aaKnown RBP13.04□□□□□ -0.32
SKA1-202ENST00000398452 SPACA3Q8IXA5 215 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 CYP4Z2PQ8N1L4 340 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 GPR32P1Q8NGA4 272 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 OR4C3Q8NH37 302 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 SLC35B4Q969S0 331 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 DTNBP1Q96EV8 351 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 SECISBP2Q96T21 854 aaKnown RBP13.04□□□□□ -0.32
SKA1-202ENST00000398452 UTP23Q9BRU9 249 aaKnown RBP13.04□□□□□ -0.32
SKA1-202ENST00000398452 REEP1Q9H902 201 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 TMEM27Q9HBJ8 222 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 RPS6KB2Q9UBS0 482 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 DNAJB9Q9UBS3 223 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 ENPP4Q9Y6X5 453 aa13.04□□□□□ -0.32
SKA1-202ENST00000398452 CDHR4A6H8M9 788 aa13.03□□□□□ -0.32
SKA1-202ENST00000398452 FAM47E-STBD1D6RA91 191 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms