RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 MYL6P60660 151 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 SLC7A9P82251 487 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 GAMTQ14353 236 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 GALEQ14376 348 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 UPP1Q16831 310 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 HYAL4Q2M3T9 481 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 RNF111Q6ZNA4 994 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 SLC26A11Q86WA9 606 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 ZNF679Q8IYX0 411 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 SAMD14Q8IZD0 417 aaPredicted RBP4.4□□□□□ -1.7
SCN1A-202ENST00000375405 ZADH2Q8N4Q0 377 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 ZBTB2Q8N680 514 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 METTL25Q8N6Q8 603 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 SLC35G3Q8N808 338 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 FIBINQ8TAL6 211 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 TAAR1Q96RJ0 339 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 LMF1Q96S06 567 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 MED17Q9NVC6 651 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 TRAPPC4Q9Y296 219 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 ZNF256Q9Y2P7 627 aaPredicted RBP4.4□□□□□ -1.7
SCN1A-202ENST00000375405 NOSIPQ9Y314 301 aaKnown RBP4.4□□□□□ -1.7
SCN1A-202ENST00000375405 TIMM9Q9Y5J7 89 aa4.4□□□□□ -1.7
SCN1A-202ENST00000375405 NFASCO94856 1347 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 ZNF609O15014 1411 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 SERPINE3A8MV23 424 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 PRR32B1ATL7 298 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 ANKRD66B4E2M5 251 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 DDNO94850 711 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-202ENST00000375405 ITGB8P26012 769 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 PRMT2P55345 433 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 ACTG1P63261 375 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 P2RY14Q15391 338 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 SAPCD1Q5SSQ6 148 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 RNLSQ5VYX0 342 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 CCDC190Q86UF4 302 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 TTC9CQ8N5M4 171 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 EXTL1Q92935 676 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 GPR22Q99680 433 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 KATNB1Q9BVA0 655 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 LRRC4CQ9HCJ2 640 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 ZNF331Q9NQX6 463 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-202ENST00000375405 P2RX2Q9UBL9 471 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 SLCO1B1Q9Y6L6 691 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 TUBAL3A6NHL2 446 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 CLDN5O00501 218 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 OR2B3O76000 313 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 CLDN1O95832 211 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 LHBP01229 141 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 TTRP02766 147 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 ITGB2P05107 769 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 ELK1P19419 428 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 OMGP23515 440 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 NOGQ13253 232 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 RPE65Q16518 533 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 QPCTQ16769 361 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 TSGA10IPQ3SY00 556 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 RAB6CQ53S08 254 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 PRAMEF8Q5VWM4 474 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 PRAMEF7Q5VXH5 474 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 SFXN4Q6P4A7 337 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 LCLAT1Q6UWP7 414 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 PIWIL3Q7Z3Z3 882 aaKnown RBP4.4□□□□□ -1.71
SCN1A-202ENST00000375405 TMCO2Q7Z6W1 182 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-202ENST00000375405 WFDC8Q8IUA0 241 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 SGPP2Q8IWX5 399 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 ATP5SQ99766 215 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 MECRQ9BV79 373 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 LHX5Q9H2C1 402 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 HRASLS2Q9NWW9 162 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 B3GAT1Q9P2W7 334 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 SEC14L4Q9UDX3 406 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 FOXO6A8MYZ6 492 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 EIF4E2O60573 245 aaKnown RBP4.4□□□□□ -1.71
SCN1A-202ENST00000375405 BCAS2O75934 225 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-202ENST00000375405 APOC3P02656 99 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 KLK1P06870 262 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 IDO1P14902 403 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 ELK4P28324 431 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 SUB1P53999 127 aaKnown RBP eCLIP4.4□□□□□ -1.71
SCN1A-202ENST00000375405 DHODHQ02127 395 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 SMAD2Q15796 467 aaKnown RBP4.4□□□□□ -1.71
SCN1A-202ENST00000375405 FAM198BQ6UWH4 519 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 TMPRSS12Q86WS5 348 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 OR2C3Q8N628 320 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 PRR7Q8TB68 274 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 PHOSPHO2Q8TCD6 241 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 CXorf58Q96LI9 332 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 ZNF582Q96NG8 517 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-202ENST00000375405 CTRCQ99895 268 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 RBM4BQ9BQ04 359 aaKnown RBP4.4□□□□□ -1.71
SCN1A-202ENST00000375405 MACROD1Q9BQ69 325 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 RBM4Q9BWF3 364 aaKnown RBP4.4□□□□□ -1.71
SCN1A-202ENST00000375405 GPR108Q9NPR9 543 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 NINJ2Q9NZG7 142 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 PNPLA7Q6ZV29 1317 aa4.4□□□□□ -1.71
SCN1A-202ENST00000375405 SLC15A5A6NIM6 579 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 MGPP08493 103 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 C7P10643 843 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 CDH1P12830 882 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 RAB5AP20339 215 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms