RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 HCAR1Q9BXC0 346 aa12.78□□□□□ -0.36
USP49-201ENST00000373006 SPRTNQ9H040 489 aaPredicted RBP12.78□□□□□ -0.36
USP49-201ENST00000373006 ARPC4-TTLL3A0A0A6YYG9 625 aa12.78□□□□□ -0.36
USP49-201ENST00000373006 CHURC1-FNTBB4DL54 471 aa12.78□□□□□ -0.36
USP49-201ENST00000373006 TOR1AO14656 332 aa12.78□□□□□ -0.36
USP49-201ENST00000373006 KDM4BO94953 1096 aa12.78□□□□□ -0.36
USP49-201ENST00000373006 TYRP14679 529 aa12.78□□□□□ -0.36
USP49-201ENST00000373006 GCGRP47871 477 aa12.78□□□□□ -0.36
USP49-201ENST00000373006 RNF144AP50876 292 aaPredicted RBP12.78□□□□□ -0.36
USP49-201ENST00000373006 HSF2Q03933 536 aa12.78□□□□□ -0.36
USP49-201ENST00000373006 DUSP2Q05923 314 aa12.78□□□□□ -0.36
USP49-201ENST00000373006 PUDPQ08623 228 aa12.78□□□□□ -0.36
USP49-201ENST00000373006 CXXC5Q7LFL8 322 aaKnown RBP12.78□□□□□ -0.36
USP49-201ENST00000373006 ACBD7Q8N6N7 88 aa12.78□□□□□ -0.36
USP49-201ENST00000373006 SUN3Q8TAQ9 357 aa12.78□□□□□ -0.36
USP49-201ENST00000373006 SETD7Q8WTS6 366 aaKnown RBP12.78□□□□□ -0.36
USP49-201ENST00000373006 NXPE2Q96DL1 559 aa12.78□□□□□ -0.36
USP49-201ENST00000373006 AIF1LQ9BQI0 150 aa12.78□□□□□ -0.36
USP49-201ENST00000373006 ZCCHC2Q9C0B9 1178 aaKnown RBP12.78□□□□□ -0.36
USP49-201ENST00000373006 OR6C2Q9NZP2 312 aa12.78□□□□□ -0.36
USP49-201ENST00000373006 IL36AQ9UHA7 158 aa12.78□□□□□ -0.36
USP49-201ENST00000373006 CYB5R1Q9UHQ9 305 aa12.78□□□□□ -0.36
USP49-201ENST00000373006 NUBP2Q9Y5Y2 271 aa12.78□□□□□ -0.36
USP49-201ENST00000373006 TP53BP1Q12888 1972 aaPredicted RBP12.78□□□□□ -0.36
USP49-201ENST00000373006 DAPL1A0PJW8 107 aa12.77□□□□□ -0.36
USP49-201ENST00000373006 FCMRO60667 390 aa12.77□□□□□ -0.36
USP49-201ENST00000373006 SNRPBP14678 240 aaKnown RBP12.77□□□□□ -0.36
USP49-201ENST00000373006 ACADLP28330 430 aa12.77□□□□□ -0.36
USP49-201ENST00000373006 MMP12P39900 470 aa12.77□□□□□ -0.36
USP49-201ENST00000373006 SSR2P43308 183 aa12.77□□□□□ -0.36
USP49-201ENST00000373006 GPR1P46091 355 aa12.77□□□□□ -0.36
USP49-201ENST00000373006 SELENOPP49908 381 aa12.77□□□□□ -0.36
USP49-201ENST00000373006 KHKP50053 298 aa12.77□□□□□ -0.36
USP49-201ENST00000373006 RPS7P62081 194 aaKnown RBP12.77□□□□□ -0.36
USP49-201ENST00000373006 ACSM1Q08AH1 577 aa12.77□□□□□ -0.36
USP49-201ENST00000373006 ST3GAL3Q11203 375 aa12.77□□□□□ -0.36
USP49-201ENST00000373006 RAB33AQ14088 237 aa12.77□□□□□ -0.36
USP49-201ENST00000373006 GNA13Q14344 377 aa12.77□□□□□ -0.36
USP49-201ENST00000373006 GSG1Q2KHT4 349 aa12.77□□□□□ -0.36
USP49-201ENST00000373006 SFRP4Q6FHJ7 346 aaPredicted RBP12.77□□□□□ -0.36
USP49-201ENST00000373006 RTL4Q6ZR62 310 aa12.77□□□□□ -0.36
USP49-201ENST00000373006 PRSS42Q7Z5A4 293 aa12.77□□□□□ -0.36
USP49-201ENST00000373006 TCEAL8Q8IYN2 117 aa12.77□□□□□ -0.36
USP49-201ENST00000373006 ZNF527Q8NB42 609 aa12.77□□□□□ -0.36
USP49-201ENST00000373006 C17orf47Q8NEP4 570 aa12.77□□□□□ -0.36
USP49-201ENST00000373006 DIO2Q92813 273 aa12.77□□□□□ -0.36
USP49-201ENST00000373006 RAD51AP1Q96B01 352 aa12.77□□□□□ -0.36
USP49-201ENST00000373006 OR2M2Q96R28 347 aa12.77□□□□□ -0.36
USP49-201ENST00000373006 ORAI3Q9BRQ5 295 aa12.77□□□□□ -0.36
USP49-201ENST00000373006 GSDMCQ9BYG8 508 aa12.77□□□□□ -0.36
USP49-201ENST00000373006 ENKD1Q9H0I2 346 aa12.77□□□□□ -0.36
USP49-201ENST00000373006 METTL17Q9H7H0 456 aaPredicted RBP12.77□□□□□ -0.36
USP49-201ENST00000373006 DLL4Q9NR61 685 aa12.77□□□□□ -0.36
USP49-201ENST00000373006 IL20Q9NYY1 176 aa12.77□□□□□ -0.36
USP49-201ENST00000373006 FLVCR2Q9UPI3 526 aa12.77□□□□□ -0.36
USP49-201ENST00000373006 WASH3PC4AMC7 463 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 NDUFS4O43181 175 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 RGS11O94810 467 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 THY1P04216 161 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 H2AFB2P0C5Z0 115 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 SYN1P17600 705 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 SLC7A9P82251 487 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 ZNF805Q5CZA5 627 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 FCRLBQ6BAA4 426 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 DPPA4Q7L190 304 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 PARS2Q7L3T8 475 aaKnown RBP12.77□□□□□ -0.37
USP49-201ENST00000373006 FTMTQ8N4E7 242 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 MS4A15Q8N5U1 240 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 HERVK_113Q902F9 699 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 YIPF5Q969M3 257 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 RGMAQ96B86 450 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 TEX12Q9BXU0 123 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 ACSS1Q9NUB1 689 aaPredicted RBP12.77□□□□□ -0.37
USP49-201ENST00000373006 VCANP13611 3396 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 CHD7Q9P2D1 2997 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 ARID1AO14497 2285 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 HYAL3O43820 417 aaPredicted RBP12.77□□□□□ -0.37
USP49-201ENST00000373006 PEX14O75381 377 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 CLDN2P57739 230 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 CLLU1Q5K131 121 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 C9orf64Q5T6V5 341 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 PYHIN1Q6K0P9 492 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 LCTLQ6UWM7 567 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 OR2T33Q8NG76 320 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 TFGQ92734 400 aaPredicted RBP12.77□□□□□ -0.37
USP49-201ENST00000373006 ARSGQ96EG1 525 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 CAPNS2Q96L46 248 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 PINK1Q9BXM7 581 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 OR51V1Q9H2C8 321 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 KLHL31Q9H511 634 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 TM7SF3Q9NS93 570 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 MARK1Q9P0L2 795 aa12.77□□□□□ -0.37
USP49-201ENST00000373006 J3QLW9 94 aa12.76□□□□□ -0.37
USP49-201ENST00000373006 APOC3P02656 99 aa12.76□□□□□ -0.37
USP49-201ENST00000373006 WNT1P04628 370 aa12.76□□□□□ -0.37
USP49-201ENST00000373006 IFNA16P05015 189 aa12.76□□□□□ -0.37
USP49-201ENST00000373006 ZNF19P17023 458 aa12.76□□□□□ -0.37
USP49-201ENST00000373006 ZP1P60852 638 aa12.76□□□□□ -0.37
USP49-201ENST00000373006 LHFPL5Q8TAF8 219 aa12.76□□□□□ -0.37
USP49-201ENST00000373006 GCDHQ92947 438 aaPredicted RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms