RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 OTUB1Q96FW1 271 aaPredicted RBP11.93□□□□□ -0.5
CLK3-201ENST00000345005 PEX11GQ96HA9 241 aa11.93□□□□□ -0.5
CLK3-201ENST00000345005 SLC41A2Q96JW4 573 aa11.93□□□□□ -0.5
CLK3-201ENST00000345005 DEPDC7Q96QD5 511 aa11.93□□□□□ -0.5
CLK3-201ENST00000345005 GAREM1Q9H706 876 aa11.93□□□□□ -0.5
CLK3-201ENST00000345005 DDX28Q9NUL7 540 aaKnown RBP11.93□□□□□ -0.5
CLK3-201ENST00000345005 GPR83Q9NYM4 423 aa11.93□□□□□ -0.5
CLK3-201ENST00000345005 ZNF226Q9NYT6 803 aa11.93□□□□□ -0.5
CLK3-201ENST00000345005 MAT2BQ9NZL9 334 aa11.93□□□□□ -0.5
CLK3-201ENST00000345005 KCNE3Q9Y6H6 103 aa11.93□□□□□ -0.5
CLK3-201ENST00000345005 WDFY4Q6ZS81 3184 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 SEC16AO15027 2179 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 ADAMTS20P59510 1910 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 TMEM150CB9EJG8 249 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 TOX3O15405 576 aaPredicted RBP11.92□□□□□ -0.5
CLK3-201ENST00000345005 TRIM3O75382 744 aaPredicted RBP11.92□□□□□ -0.5
CLK3-201ENST00000345005 MSL3P1P0C860 447 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 SPNP16150 400 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 CSF2RBP32927 897 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 CSTF2P33240 577 aaKnown RBP eCLIP11.92□□□□□ -0.5
CLK3-201ENST00000345005 NR4A2P43354 598 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 GNG2P59768 71 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 SNRPGP62308 76 aaKnown RBP11.92□□□□□ -0.5
CLK3-201ENST00000345005 MGAT2Q10469 447 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 STX4Q12846 297 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 COL9A2Q14055 689 aaPredicted RBP11.92□□□□□ -0.5
CLK3-201ENST00000345005 KCNAB1Q14722 419 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 CDK10Q15131 360 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 TMEM71Q6P5X7 295 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 TMPRSS11AQ6ZMR5 421 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 BPHLQ86WA6 291 aaPredicted RBP11.92□□□□□ -0.5
CLK3-201ENST00000345005 GPR135Q8IZ08 494 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 OR8H2Q8N162 312 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 TMEM105Q8N8V8 129 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 SLC16A11Q8NCK7 471 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 B3GNT7Q8NFL0 401 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 KIAA1143Q96AT1 154 aaPredicted RBP11.92□□□□□ -0.5
CLK3-201ENST00000345005 CTHRC1Q96CG8 243 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 MVB12AQ96EY5 273 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 CENPOQ9BU64 300 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 PINK1Q9BXM7 581 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 SLC22A4Q9H015 551 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 TRIM45Q9H8W5 580 aaPredicted RBP11.92□□□□□ -0.5
CLK3-201ENST00000345005 SMURF1Q9HCE7 757 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 PRTFDC1Q9NRG1 225 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 CUTCQ9NTM9 273 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 SERTAD3Q9UJW9 196 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 STUB1Q9UNE7 303 aa11.92□□□□□ -0.5
CLK3-201ENST00000345005 IQCMA0A1B0GVH7 501 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 CPED1A4D0V7 1026 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 CASC3O15234 703 aaKnown RBP11.91□□□□□ -0.5
CLK3-201ENST00000345005 SIGLEC6O43699 453 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 GADD45GO95257 159 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 LGI1O95970 557 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 RECKO95980 971 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 PTHP01270 115 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 YES1P07947 543 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 HSMCR30P0CW71 290 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 TNFSF8P32971 234 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 SOX18P35713 384 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 TGFBR1P36897 503 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 CDH12P55289 794 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 IGLV3-21P80748 117 aaPredicted RBP11.91□□□□□ -0.5
CLK3-201ENST00000345005 MAP4K2Q12851 820 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 C1DQ13901 141 aaKnown RBP11.91□□□□□ -0.5
CLK3-201ENST00000345005 ARHGAP11BQ3KRB8 267 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 ATAD3CQ5T2N8 411 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 XKRXQ6PP77 449 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 PTCHD4Q6ZW05 846 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 SHISA5Q8N114 240 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 CYP4Z2PQ8N1L4 340 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 CLIP4Q8N3C7 705 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 GDPD1Q8N9F7 314 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 CDRT4Q8N9R6 151 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 OR51Q1Q8NH59 317 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 SLC9A6Q92581 669 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 NACC2Q96BF6 587 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 RBM18Q96H35 190 aaKnown RBP11.91□□□□□ -0.5
CLK3-201ENST00000345005 TRAF4Q9BUZ4 470 aaPredicted RBP11.91□□□□□ -0.5
CLK3-201ENST00000345005 TAPBPLQ9BX59 468 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 SLC38A1Q9H2H9 487 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 PIGUQ9H490 435 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 MTHFD2LQ9H903 347 aaPredicted RBP11.91□□□□□ -0.5
CLK3-201ENST00000345005 MARCH7Q9H992 704 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 ACER3Q9NUN7 267 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 PRELID1Q9Y255 219 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 SLC9A8Q9Y2E8 581 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 CAB39Q9Y376 341 aaPredicted RBP11.91□□□□□ -0.5
CLK3-201ENST00000345005 NUP210LQ5VU65 1888 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 LAMA1P25391 3075 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 DSPPQ9NZW4 1301 aa11.91□□□□□ -0.5
CLK3-201ENST00000345005 FAM86C2PA6NEL3 165 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 ZAR1LA6NP61 321 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 A8MU76 341 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 H3BMH7 237 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 J3KTA2 159 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 ALPPP05187 535 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 HSD17B7P56937 341 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 SMIM11AP58511 58 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 MAT1AQ00266 395 aaKnown RBP11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms