RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 CLDN18P56856 261 aa13.93□□□□□ -0.18
VAPA-201ENST00000340541 KRTAP10-9P60411 292 aa13.93□□□□□ -0.18
VAPA-201ENST00000340541 TFF3Q07654 80 aa13.93□□□□□ -0.18
VAPA-201ENST00000340541 GANABQ14697 944 aaKnown RBP13.93□□□□□ -0.18
VAPA-201ENST00000340541 TMEM44Q2T9K0 475 aa13.93□□□□□ -0.18
VAPA-201ENST00000340541 KLHL26Q53HC5 615 aa13.93□□□□□ -0.18
VAPA-201ENST00000340541 OLIG3Q7RTU3 272 aa13.93□□□□□ -0.18
VAPA-201ENST00000340541 PM20D2Q8IYS1 436 aa13.93□□□□□ -0.18
VAPA-201ENST00000340541 MIER2Q8N344 545 aa13.93□□□□□ -0.18
VAPA-201ENST00000340541 GATSQ8NAP1 163 aa13.93□□□□□ -0.18
VAPA-201ENST00000340541 SFXN2Q96NB2 322 aa13.93□□□□□ -0.18
VAPA-201ENST00000340541 PANX1Q96RD7 426 aa13.93□□□□□ -0.18
VAPA-201ENST00000340541 SLC35A5Q9BS91 424 aa13.93□□□□□ -0.18
VAPA-201ENST00000340541 CCDC28BQ9BUN5 200 aa13.93□□□□□ -0.18
VAPA-201ENST00000340541 SLC6A13Q9NSD5 602 aa13.93□□□□□ -0.18
VAPA-201ENST00000340541 Q9UFV3 132 aa13.93□□□□□ -0.18
VAPA-201ENST00000340541 CAMK2AQ9UQM7 478 aa13.93□□□□□ -0.18
VAPA-201ENST00000340541 HCFC1P51610 2035 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 PRAMEF27A3QJZ7 478 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 DUXAA6NLW8 204 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 SCDO00767 359 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 OIP5O43482 229 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 FCMRO60667 390 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 EDF1O60869 148 aaKnown RBP13.92□□□□□ -0.18
VAPA-201ENST00000340541 GSNP06396 782 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 ZNF708P17019 499 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 HK1P19367 917 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 ATP6V1C1P21283 382 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 MSX1P28360 303 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 ATP12AP54707 1039 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 LRRC74AQ0VAA2 488 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 FUT5Q11128 374 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 ARHGAP11BQ3KRB8 267 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 RIPPLY2Q5TAB7 128 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 AP1ARQ63HQ0 302 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 NSUN5P2Q63ZY6 315 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 TNFAIP8L2Q6P589 184 aaPredicted RBP13.92□□□□□ -0.18
VAPA-201ENST00000340541 ARSKQ6UWY0 536 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 ADGRE4PQ86SQ3 457 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 LIX1LQ8IVB5 337 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 DMRTC2Q8IXT2 367 aaPredicted RBP13.92□□□□□ -0.18
VAPA-201ENST00000340541 NAXEQ8NCW5 288 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 ZPLD1Q8TCW7 415 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 STON2Q8WXE9 905 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 RAB8BQ92930 207 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 DTNBP1Q96EV8 351 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 DOCK7Q96N67 2140 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 ZNF350Q9GZX5 532 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 ACBD3Q9H3P7 528 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 PTGES2Q9H7Z7 377 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 KCNN3Q9UGI6 736 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 KCNE5Q9UJ90 142 aa13.92□□□□□ -0.18
VAPA-201ENST00000340541 CENPVL1A0A0U1RR11 272 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 FAM234BA2RU67 622 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 OR2M5A3KFT3 312 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 CD8B2A6NJW9 211 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 GMFGO60234 142 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 AK1P00568 194 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 OR12D1P0DN82 309 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 CEACAM8P31997 349 aaPredicted RBP13.91□□□□□ -0.18
VAPA-201ENST00000340541 GCKP35557 465 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 RNF144AP50876 292 aaPredicted RBP13.91□□□□□ -0.18
VAPA-201ENST00000340541 POLR2JP52435 117 aaKnown RBP13.91□□□□□ -0.18
VAPA-201ENST00000340541 MVDP53602 400 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 CLDN15P56746 228 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 GLYR1Q49A26 553 aaPredicted RBP13.91□□□□□ -0.18
VAPA-201ENST00000340541 FLYWCH1Q4VC44 716 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 TIGD2Q4W5G0 525 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 AAGABQ6PD74 315 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 ENPP6Q6UWR7 440 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 MSANTD1Q6ZTZ1 278 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 RNF130Q86XS8 419 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 LACC1Q8IV20 430 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 FUNDC1Q8IVP5 155 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 MISPQ8IVT2 679 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 TNIP2Q8NFZ5 429 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 OR5M1Q8NGP8 315 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 VPS33AQ96AX1 596 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 NPAS1Q99742 590 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 TUBA1CQ9BQE3 449 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 UCK2Q9BZX2 261 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 NMUR2Q9GZQ4 415 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 HOXD1Q9GZZ0 328 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 SLC52A3Q9NQ40 469 aa13.91□□□□□ -0.18
VAPA-201ENST00000340541 C2CD3Q4AC94 2353 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 UQCRHLA0A096LP55 91 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 MBD3L4A6NDZ8 208 aaPredicted RBP13.9□□□□□ -0.18
VAPA-201ENST00000340541 MBD3L3A6NE82 208 aaPredicted RBP13.9□□□□□ -0.18
VAPA-201ENST00000340541 MBD3L5A6NJ08 208 aaPredicted RBP13.9□□□□□ -0.18
VAPA-201ENST00000340541 SHISA8B8ZZ34 492 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 FAM47E-STBD1D6RA91 191 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 HMGN4O00479 90 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 RFXANKO14593 260 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 STX11O75558 287 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 GUSBP08236 651 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 ZCCHC18P0CG32 403 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 HPGDP15428 266 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 CD1EP15812 388 aa13.9□□□□□ -0.18
VAPA-201ENST00000340541 PSMA4P25789 261 aaKnown RBP13.9□□□□□ -0.18
VAPA-201ENST00000340541 TIMP3P35625 211 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms