RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 IGHV3-20A0A0C4DH32 117 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 TRIM64CA6NLI5 447 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 C4orf47A7E2U8 309 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 PRKNO60260 465 aaPredicted RBP14.25□□□□□ -0.13
LIMS1-202ENST00000338045 LRP3O75074 770 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 ELK4P28324 431 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 UGT2B15P54855 530 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 RAB15P59190 212 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 ISXQ2M1V0 245 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 KLHL26Q53HC5 615 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 C6orf141Q5SZD1 244 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 FAM198BQ6UWH4 519 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 ZER1Q7Z7L7 766 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 ZNF614Q8N883 585 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 APCDD1LQ8NCL9 501 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 B3GNT7Q8NFL0 401 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 TSPAN14Q8NG11 270 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 ACOT11Q8WXI4 607 aaPredicted RBP14.25□□□□□ -0.13
LIMS1-202ENST00000338045 HDAC2Q92769 488 aaKnown RBP14.25□□□□□ -0.13
LIMS1-202ENST00000338045 EFHD2Q96C19 240 aaPredicted RBP14.25□□□□□ -0.13
LIMS1-202ENST00000338045 GAL3ST4Q96RP7 486 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 MESP1Q9BRJ9 268 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 UCK2Q9BZX2 261 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 UBQLN4Q9NRR5 601 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 ZNF223Q9UK11 482 aaPredicted RBP14.25□□□□□ -0.13
LIMS1-202ENST00000338045 MRTO4Q9UKD2 239 aaKnown RBP14.25□□□□□ -0.13
LIMS1-202ENST00000338045 LOXL2Q9Y4K0 774 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 PCDHGA6Q9Y5G7 932 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 PCDHGA1Q9Y5H4 931 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 TRAPPC13A5PLN9 417 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 SERINC4A6NH21 518 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 LYPD3O95274 346 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 CLPTM1O96005 669 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 TFAP2AP05549 437 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 OSMP13725 252 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 ITIH1P19827 911 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 MMP11P24347 488 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 GGT2P36268 569 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 ADH7P40394 386 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 ACAA2P42765 397 aaKnown RBP14.25□□□□□ -0.13
LIMS1-202ENST00000338045 RNF144AP50876 292 aaPredicted RBP14.25□□□□□ -0.13
LIMS1-202ENST00000338045 NUP107P57740 925 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 PSPHP78330 225 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 LSM11P83369 360 aaKnown RBP eCLIP14.25□□□□□ -0.13
LIMS1-202ENST00000338045 COX10Q12887 443 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 TARDBPQ13148 414 aaKnown RBP eCLIP14.25□□□□□ -0.13
LIMS1-202ENST00000338045 CDK5R2Q13319 367 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 OR1Q1Q15612 314 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 MEP1AQ16819 746 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 RBM48Q5RL73 367 aaKnown RBP14.25□□□□□ -0.13
LIMS1-202ENST00000338045 HLA-DQA1Q5Y7H0 255 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 NKAIN4Q8IVV8 208 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 HSPBAP1Q96EW2 488 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 LIN37Q96GY3 246 aaPredicted RBP14.25□□□□□ -0.13
LIMS1-202ENST00000338045 PARD6AQ9NPB6 346 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 TOR4AQ9NXH8 423 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 B3GALT1Q9Y5Z6 326 aa14.25□□□□□ -0.13
LIMS1-202ENST00000338045 KIF26BQ2KJY2 2108 aa14.24□□□□□ -0.13
LIMS1-202ENST00000338045 ADAM11O75078 769 aa14.24□□□□□ -0.13
LIMS1-202ENST00000338045 CHMP24386 653 aa14.24□□□□□ -0.13
LIMS1-202ENST00000338045 ETV5P41161 510 aa14.24□□□□□ -0.13
LIMS1-202ENST00000338045 TUBA4AP68366 448 aa14.24□□□□□ -0.13
LIMS1-202ENST00000338045 IL5RAQ01344 420 aa14.24□□□□□ -0.13
LIMS1-202ENST00000338045 DCAF12Q5T6F0 453 aa14.24□□□□□ -0.13
LIMS1-202ENST00000338045 FNDC7Q5VTL7 733 aa14.24□□□□□ -0.13
LIMS1-202ENST00000338045 ZNF613Q6PF04 617 aa14.24□□□□□ -0.13
LIMS1-202ENST00000338045 PAPD4Q6PIY7 484 aaKnown RBP14.24□□□□□ -0.13
LIMS1-202ENST00000338045 Q6ZPB1 254 aaPredicted RBP14.24□□□□□ -0.13
LIMS1-202ENST00000338045 CPEB2Q7Z5Q1 589 aaKnown RBP14.24□□□□□ -0.13
LIMS1-202ENST00000338045 FAM71CQ8NEG0 241 aa14.24□□□□□ -0.13
LIMS1-202ENST00000338045 TP53INP1Q96A56 240 aa14.24□□□□□ -0.13
LIMS1-202ENST00000338045 PRSS27Q9BQR3 290 aa14.24□□□□□ -0.13
LIMS1-202ENST00000338045 ZNF559Q9BR84 538 aa14.24□□□□□ -0.13
LIMS1-202ENST00000338045 ZPBPQ9BS86 351 aa14.24□□□□□ -0.13
LIMS1-202ENST00000338045 TUBA8Q9NY65 449 aaPredicted RBP14.24□□□□□ -0.13
LIMS1-202ENST00000338045 SLC35A3Q9Y2D2 325 aa14.24□□□□□ -0.13
LIMS1-202ENST00000338045 OTOGLQ3ZCN5 2332 aa14.23□□□□□ -0.13
LIMS1-202ENST00000338045 ZAR1LA6NP61 321 aa14.23□□□□□ -0.13
LIMS1-202ENST00000338045 TSPAN2O60636 221 aa14.23□□□□□ -0.13
LIMS1-202ENST00000338045 TP53P04637 393 aaPredicted RBP14.23□□□□□ -0.13
LIMS1-202ENST00000338045 TBXA2RP21731 343 aa14.23□□□□□ -0.13
LIMS1-202ENST00000338045 TGM1P22735 817 aa14.23□□□□□ -0.13
LIMS1-202ENST00000338045 CRHBPP24387 322 aa14.23□□□□□ -0.13
LIMS1-202ENST00000338045 IFNGR2P38484 337 aa14.23□□□□□ -0.13
LIMS1-202ENST00000338045 NR0B1P51843 470 aaKnown RBP14.23□□□□□ -0.13
LIMS1-202ENST00000338045 CRISP1P54107 249 aa14.23□□□□□ -0.13
LIMS1-202ENST00000338045 RNF4P78317 190 aa14.23□□□□□ -0.13
LIMS1-202ENST00000338045 ALDH6A1Q02252 535 aaKnown RBP14.23□□□□□ -0.13
LIMS1-202ENST00000338045 MAD2L1BPQ15013 274 aaPredicted RBP14.23□□□□□ -0.13
LIMS1-202ENST00000338045 PTGES3Q15185 160 aaKnown RBP14.23□□□□□ -0.13
LIMS1-202ENST00000338045 FAM199XQ6PEV8 388 aaPredicted RBP14.23□□□□□ -0.13
LIMS1-202ENST00000338045 ZNF730Q6ZMV8 503 aa14.23□□□□□ -0.13
LIMS1-202ENST00000338045 RAB11FIP2Q7L804 512 aa14.23□□□□□ -0.13
LIMS1-202ENST00000338045 ZNF550Q7Z398 422 aa14.23□□□□□ -0.13
LIMS1-202ENST00000338045 LSMEM1Q8N8F7 131 aa14.23□□□□□ -0.13
LIMS1-202ENST00000338045 ZNF527Q8NB42 609 aa14.23□□□□□ -0.13
LIMS1-202ENST00000338045 PRSS33Q8NF86 280 aa14.23□□□□□ -0.13
LIMS1-202ENST00000338045 MR1Q95460 341 aa14.23□□□□□ -0.13
LIMS1-202ENST00000338045 ZNF566Q969W8 418 aa14.23□□□□□ -0.13
LIMS1-202ENST00000338045 LPAR4Q99677 370 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms