RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 CHMP24386 653 aa14.33□□□□□ -0.12
CLN3-201ENST00000333496 CHRNB4P30926 498 aa14.33□□□□□ -0.12
CLN3-201ENST00000333496 GANABQ14697 944 aaKnown RBP14.33□□□□□ -0.12
CLN3-201ENST00000333496 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.33□□□□□ -0.12
CLN3-201ENST00000333496 SPATA21Q7Z572 469 aa14.33□□□□□ -0.12
CLN3-201ENST00000333496 LIX1LQ8IVB5 337 aa14.33□□□□□ -0.12
CLN3-201ENST00000333496 CHDHQ8NE62 594 aaPredicted RBP14.33□□□□□ -0.12
CLN3-201ENST00000333496 ASB5Q8WWX0 329 aa14.33□□□□□ -0.12
CLN3-201ENST00000333496 NEURL3Q96EH8 262 aa14.33□□□□□ -0.12
CLN3-201ENST00000333496 SFXN2Q96NB2 322 aa14.33□□□□□ -0.12
CLN3-201ENST00000333496 SLC35A5Q9BS91 424 aa14.33□□□□□ -0.12
CLN3-201ENST00000333496 UCK2Q9BZX2 261 aa14.33□□□□□ -0.12
CLN3-201ENST00000333496 PTGES2Q9H7Z7 377 aa14.33□□□□□ -0.12
CLN3-201ENST00000333496 TCF7L2Q9NQB0 619 aa14.33□□□□□ -0.12
CLN3-201ENST00000333496 DCHS2Q6V1P9 2916 aa14.33□□□□□ -0.12
CLN3-201ENST00000333496 CCDC154A6NI56 674 aa14.32□□□□□ -0.12
CLN3-201ENST00000333496 DUXAA6NLW8 204 aa14.32□□□□□ -0.12
CLN3-201ENST00000333496 SCDO00767 359 aa14.32□□□□□ -0.12
CLN3-201ENST00000333496 HK1P19367 917 aa14.32□□□□□ -0.12
CLN3-201ENST00000333496 CLDN18P56856 261 aa14.32□□□□□ -0.12
CLN3-201ENST00000333496 KLHL26Q53HC5 615 aa14.32□□□□□ -0.12
CLN3-201ENST00000333496 AAGABQ6PD74 315 aa14.32□□□□□ -0.12
CLN3-201ENST00000333496 ENPP6Q6UWR7 440 aa14.32□□□□□ -0.12
CLN3-201ENST00000333496 ARSKQ6UWY0 536 aa14.32□□□□□ -0.12
CLN3-201ENST00000333496 OLIG3Q7RTU3 272 aa14.32□□□□□ -0.12
CLN3-201ENST00000333496 NAXEQ8NCW5 288 aa14.32□□□□□ -0.12
CLN3-201ENST00000333496 TNIP2Q8NFZ5 429 aa14.32□□□□□ -0.12
CLN3-201ENST00000333496 OR5M1Q8NGP8 315 aa14.32□□□□□ -0.12
CLN3-201ENST00000333496 DTNBP1Q96EV8 351 aa14.32□□□□□ -0.12
CLN3-201ENST00000333496 PANX1Q96RD7 426 aa14.32□□□□□ -0.12
CLN3-201ENST00000333496 ZBTB18Q99592 522 aa14.32□□□□□ -0.12
CLN3-201ENST00000333496 SLC6A13Q9NSD5 602 aa14.32□□□□□ -0.12
CLN3-201ENST00000333496 ARL2BPQ9Y2Y0 163 aa14.32□□□□□ -0.12
CLN3-201ENST00000333496 CENPEQ02224 2701 aa14.32□□□□□ -0.12
CLN3-201ENST00000333496 FCMRO60667 390 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 IL6P05231 212 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 GSNP06396 782 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 OR12D1P0DN82 309 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 HPGDP15428 266 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 ZNF708P17019 499 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 ATP6V1C1P21283 382 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 CEACAM8P31997 349 aaPredicted RBP14.31□□□□□ -0.12
CLN3-201ENST00000333496 GCKP35557 465 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 RNF144AP50876 292 aaPredicted RBP14.31□□□□□ -0.12
CLN3-201ENST00000333496 ATP12AP54707 1039 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 AQP5P55064 265 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 CLDN15P56746 228 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 SRYQ05066 204 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 TFF3Q07654 80 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 SF3A3Q12874 501 aaKnown RBP eCLIP14.31□□□□□ -0.12
CLN3-201ENST00000333496 TMEM44Q2T9K0 475 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 ARHGAP11BQ3KRB8 267 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 RIPPLY2Q5TAB7 128 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 NSUN5P2Q63ZY6 315 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 HEPHL1Q6MZM0 1159 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 TNFAIP8L2Q6P589 184 aaPredicted RBP14.31□□□□□ -0.12
CLN3-201ENST00000333496 PLXDC2Q6UX71 529 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 ADGRE4PQ86SQ3 457 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 MIER2Q8N344 545 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 ZPLD1Q8TCW7 415 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 RAB8BQ92930 207 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 NPAS1Q99742 590 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 TUBA1CQ9BQE3 449 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 CHST11Q9NPF2 352 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 KCNE5Q9UJ90 142 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 ZNF337Q9Y3M9 751 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 UNC79Q9P2D8 2635 aa14.31□□□□□ -0.12
CLN3-201ENST00000333496 OR2M5A3KFT3 312 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 PRAMEF27A3QJZ7 478 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 NKX2-6A6NCS4 301 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 CD8B2A6NJW9 211 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 FAM90A27PA6NNH2 459 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 SHISA8B8ZZ34 492 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 OIP5O43482 229 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 TROVE2P10155 538 aaKnown RBP eCLIP14.3□□□□□ -0.12
CLN3-201ENST00000333496 TIMP3P35625 211 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 CHI3L1P36222 383 aaPredicted RBP14.3□□□□□ -0.12
CLN3-201ENST00000333496 MRPL19P49406 292 aaKnown RBP14.3□□□□□ -0.12
CLN3-201ENST00000333496 POLR2JP52435 117 aaKnown RBP14.3□□□□□ -0.12
CLN3-201ENST00000333496 LRRC74AQ0VAA2 488 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 FUT5Q11128 374 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 FLYWCH1Q4VC44 716 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 SWT1Q5T5J6 900 aaKnown RBP14.3□□□□□ -0.12
CLN3-201ENST00000333496 RAET1LQ5VY80 246 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 ZNF621Q6ZSS3 439 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 LACC1Q8IV20 430 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 XAGE5Q8WWM1 108 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 SH3YL1Q96HL8 342 aaPredicted RBP14.3□□□□□ -0.12
CLN3-201ENST00000333496 TRIB1Q96RU8 372 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 CCDC28BQ9BUN5 200 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 ZNF350Q9GZX5 532 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 VDAC3Q9Y277 283 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 CENPVL1A0A0U1RR11 272 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 MBD3L4A6NDZ8 208 aaPredicted RBP14.3□□□□□ -0.12
CLN3-201ENST00000333496 MBD3L3A6NE82 208 aaPredicted RBP14.3□□□□□ -0.12
CLN3-201ENST00000333496 MBD3L5A6NJ08 208 aaPredicted RBP14.3□□□□□ -0.12
CLN3-201ENST00000333496 RFXANKO14593 260 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 AK1P00568 194 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 MSX1P28360 303 aa14.3□□□□□ -0.12
CLN3-201ENST00000333496 ZNF117Q03924 483 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms