RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 PAMR1Q6UXH9 720 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 PRSS48Q7RTY5 328 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 TMEM110Q86TL2 294 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 Q8N9G6 341 aaPredicted RBP2.52□□□□□ -2.01
HMGB1-201ENST00000326004 NFAM1Q8NET5 270 aaPredicted RBP2.52□□□□□ -2.01
HMGB1-201ENST00000326004 MRAPQ8TCY5 172 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 GIPC3Q8TF64 312 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 ART4Q93070 314 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 TADA1Q96BN2 335 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 CCT8L2Q96SF2 557 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 THUMPD2Q9BTF0 503 aaKnown RBP2.52□□□□□ -2.01
HMGB1-201ENST00000326004 PAXXQ9BUH6 204 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 NT5C3AQ9H0P0 336 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 KAT8Q9H7Z6 458 aaKnown RBP2.52□□□□□ -2.01
HMGB1-201ENST00000326004 ECT2Q9H8V3 914 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 LPAR2Q9HBW0 351 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 VAT1LQ9HCJ6 419 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 PRR34Q9NV39 138 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 ELOVL2Q9NXB9 296 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 TMOD2Q9NZR1 351 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 GALPQ9UBC7 116 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 EIF3LQ9Y262 564 aaKnown RBP2.52□□□□□ -2.01
HMGB1-201ENST00000326004 TMEM131LA2VDJ0 1609 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 SLIT2O94813 1529 aa2.52□□□□□ -2.01
HMGB1-201ENST00000326004 ABCC4O15439 1325 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 FAM168BA1KXE4 195 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 RNF222A6NCQ9 220 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 FAM220BPB1ANY3 271 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 WASH3PC4AMC7 463 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 H0YL77 283 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 TM9SF1O15321 606 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 RIPK2O43353 540 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 TSC22D2O75157 780 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 SCGB2A1O75556 95 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 APBB3O95704 486 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 IGKV3-15P01624 115 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 TPM2P07951 284 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 IGFBP1P08833 259 aaPredicted RBP2.51□□□□□ -2.01
HMGB1-201ENST00000326004 ANXA4P09525 319 aaPredicted RBP2.51□□□□□ -2.01
HMGB1-201ENST00000326004 ALPIP09923 528 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 DPP4P27487 766 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 XCR1P46094 333 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 HNMTP50135 292 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 HMGN5P82970 282 aaKnown RBP2.51□□□□□ -2.01
HMGB1-201ENST00000326004 HSF2Q03933 536 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 CD47Q08722 323 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 CAMK4Q16566 473 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 LDLRAP1Q5SW96 308 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 RIPPLY2Q5TAB7 128 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 RSBN1Q5VWQ0 802 aaPredicted RBP2.51□□□□□ -2.01
HMGB1-201ENST00000326004 AFTPHQ6ULP2 937 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 BTNL3Q6UXE8 466 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 WASH2PQ6VEQ5 465 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 HACD2Q6Y1H2 254 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 TMEM184AQ6ZMB5 413 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 RGS9BPQ6ZS82 235 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 ARMCX2Q7L311 632 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 PARGQ86W56 976 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 MISPQ8IVT2 679 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 ZBED8Q8IZ13 594 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 SPEM1Q8N4L4 309 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 CD177Q8N6Q3 437 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 OR52B4Q8NGK2 314 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 GTSF1Q8WW33 167 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 MCHR2Q969V1 340 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 ADIPOR1Q96A54 375 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 ELMO2Q96JJ3 720 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 SERAC1Q96JX3 654 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 ERP44Q9BS26 406 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 ELOVL4Q9GZR5 314 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 ACTR8Q9H981 624 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 TNFRSF19Q9NS68 423 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 EXTL2Q9UBQ6 330 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 NAP1L2Q9ULW6 460 aaPredicted RBP2.51□□□□□ -2.01
HMGB1-201ENST00000326004 FOXJ3Q9UPW0 622 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 MGAT4BQ9UQ53 548 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 VSIG4Q9Y279 399 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 U3KQV3 271 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 SLIT1O75093 1534 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 MYOM2P54296 1465 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 RPRD2Q5VT52 1461 aaKnown RBP2.51□□□□□ -2.01
HMGB1-201ENST00000326004 UBR1Q8IWV7 1749 aa2.51□□□□□ -2.01
HMGB1-201ENST00000326004 ARHGEF28Q8N1W1 1705 aaKnown RBP2.51□□□□□ -2.01
HMGB1-201ENST00000326004 MARF1Q9Y4F3 1742 aaKnown RBP2.51□□□□□ -2.01
HMGB1-201ENST00000326004 KDRP35968 1356 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 CCDC7Q96M83 1385 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 TMEM2Q9UHN6 1383 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 SAMD9Q5K651 1589 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 A0A087WZY1 265 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 IGHV3-35A0A0C4DH35 117 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 A0A1B0GWJ7 208 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 CLRN2A0PK11 232 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 ANKRD30BLA7E2S9 258 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 WASHC1A8K0Z3 465 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 H0YCG3 227 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 ANGPT2O15123 496 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 CLDN3O15551 220 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 DUSP14O95147 198 aaKnown RBP2.5□□□□□ -2.01
HMGB1-201ENST00000326004 SLC2A10O95528 541 aa2.5□□□□□ -2.01
HMGB1-201ENST00000326004 BCKDHAP12694 445 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms